MmuEX6021632 @ mm10
Exon Skipping
Gene
ENSMUSG00000004948 | Zp3
Description
zona pellucida glycoprotein 3 [Source:MGI Symbol;Acc:MGI:99215]
Coordinates
chr5:135980099-135984265:+
Coord C1 exon
chr5:135980099-135980442
Coord A exon
chr5:135982639-135982757
Coord C2 exon
chr5:135984162-135984265
Length
119 bp
Sequences
Splice sites
3' ss Seq
ACACTATACCTTCGTTTCAGATG
3' ss Score
9.16
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
Exon sequences
Seq C1 exon
CTCATTCTGAGCCCAGCTGTACTCCAGGCGGGACCATGGCGTCAAGCTATTTCCTCTTCCTTTGTCTCCTGCTGTGTGGAGGCCCCGAGCTGTGCAATTCCCAGACTCTGTGGCTTTTGCCGGGTGGAACTCCCACCCCAGTGGGGTCCTCATCACCTGTGAAGGTGGAGTGTCTGGAAGCTGAACTAGTGGTGACTGTCAGTAGAGACCTTTTTGGCACGGGGAAGCTGGTGCAGCCCGGGGACCTCACCCTTGGCTCAGAGGGTTGTCAGCCCCGGGTGTCCGTGGATACCGACGTGGTCAGGTTCAACGCCCAGTTGCACGAGTGCAGCAGCAGGGTGCAG
Seq A exon
ATGACGAAAGATGCCCTGGTGTACAGCACCTTCCTACTCCACGACCCTCGCCCTGTGAGTGGCCTGTCCATCCTCAGGACTAACCGTGTGGAGGTACCCATTGAGTGCCGATACCCCAG
Seq C2 exon
GCAGGGCAATGTGAGCAGCCACCCTATCCAGCCCACCTGGGTTCCCTTCAGAGCCACTGTGTCCTCAGAGGAGAAACTGGCTTTCTCTCTTCGCCTGATGGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000004948-'1-3,'1-0,4-3=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.006 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0010018=Zona_pellucida=PU(22.3=56.3)
A:
PF0010018=Zona_pellucida=FE(15.0=100)
C2:
PF0010018=Zona_pellucida=FE(13.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGTGGAGTGTCTGGAAGCT
R:
TGAGGACACAGTGGCTCTGAA
Band lengths:
250-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types