RnoINT0000700 @ rn6
Intron Retention
Gene
ENSRNOG00000054843 | AABR07005593.1
Description
NA
Coordinates
chr1:189688872-189691794:-
Coord C1 exon
chr1:189691657-189691794
Coord A exon
chr1:189689226-189691656
Coord C2 exon
chr1:189688872-189689225
Length
2431 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGA
5' ss Score
8.24
3' ss Seq
ATAGCTTTCTACTCTTTCAGGTA
3' ss Score
9.71
Exon sequences
Seq C1 exon
GAATGGATCAACAAAGGCCCCCCTGTGGTCTTTTGGATCTCTGGATTCTACTTCACACAGTCCTTTTTGACGGGAGTTTCTCAGAATTATGCCAGGAAATATACCATCCCCATTGACCACATTGGATTTGAATTTGAG
Seq A exon
GTAGGAAATCTTGAGGGTTGGAACAGCTCAGGGGAAGCAACCTAAGAAAACATCATTGTTCATTTCCTTCTAAATACAAATATTTGGTTGTGTGGAGCAACAAATGTTTCAGAAGTGGAACACGTACAGAATTTGGCATAGCATAGTATGGCTCCAGAAGCTATTCTTCTTCTTCTTCTTTTTTTTTTAACTTTTTTATTAATTTTATTAAGAGTATTTCTTATTTACATTTCGAATGTTATTCCCTTTCCCAGTTTCCGGACCAACATCCCCCTAACCCCTTCTTTTTTTTTTAACTTTTTTATTAATTTTATTAAGAGTATTTCTTATTTACATTTCGAATGTTATTCCCTTTCCCAGTTTCCGGACCAACATCCCCCTAACCCCTCCCCCTCCCCTTCTATGTGGGTGTTCCCTTCCCCATCCTCCCCCCATTACCGCCCTCCCCCCCAACAATCACGTTCACTGGGGGTTCAGTCTTAGCAGGACCAAAGCTCTAGAACAAAAAGAAGCAAATACACCCAGGAGGAGTAGAAGGCAGGAAATAATTAAACTCAAGAGCTGAAATCAACCAAATAGAAACAAAAAGGACCATAGAAAGAATCAACAGAACCAAAAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCCAGACTAATGAGAGGACACAGAGAGTGTTACACATTAACAAAATCAGAAATGAAAAGGGAGACATAACTACAGAATCAGAGGAAATTCAAAAAATCATCAGATCCAGAAGCTATTCTTGATATAATCACAGTGCTGCTCCCAAGCCCTTGTTTCTGAGCATAGAAAAAAGAATTTGGTGCCAGCGAGATGGCTCAGCAGATAAAGGGGCTTGCATTCAAGCCTGGTAACCTGAGTTTGATCCCTGCAGCCCACATGAATATGAGGAGACAACTGACTCTTCAAGGTTGGTCTTTGATATTTGCATTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACACACACACACACACACACACACACACACACACACACACCCCGGAAATTAACTTTCCAGAGGAAAAGTCTGTCACCATCATGGCAAGAAAAATGCAAGGATTTCCCCTAGCCCCTGTCTATTCTGCACCTTCACTTGGAAGGATGCTTTAGATGGTCCTTAGAGATGGAAAGATTACAATTAGAATGATGTTAAATGCTTGTAACCCTCCAGTCCATCATAATCTCCACTACTCCCTACAGTCCTTATACTATCTTCTGCTCTACATGGAGGAAGCCAAGGTTGTCACTTCTCCTGTCTAAACCATGCCATCTGGAAACTGTTGTAGTTTCCTTGCTTTTGCTATAACAAAATACACTGAGCCGAGTAGCTCAGTGGAGGAATTGGCTGACAATTCCAAGTGCAACACTGTAGCGAAATCAAGGCAGGAATGTAAAGTAAGGGTTCTCAACCTTCCTAACGCTGCGACCCTTTAATACAGTTCCTCCTGTTGTGGTGACTCCCAACCATAAAATTATTTTCATTGCTACTTAACTGTTATTTTGCTACTGTTAGGAATTGCAAGGTAAATATGTGTTTTCTGATGGTCTTAGGTGACCTCTGTGAATGGCTAGTTTGACTCCCAAAGGTCTTGTGACCCACAAATGGAGCTGACTTAGGCATCAGCAGAGAGCATGTGGACCCTTGCTGGCATGCAAGTACTCAGCTCCTTCTCTAGTCTTACACAGTCCAGGGTCCAGCCCGTGAAAAGGCCACATTTAGTGGCCTTCTCACCTCAATTAAGACAAGTCTCTCATAAATGTGCCCACAGGCCAGGCCAATGCATTCAATCCCTCACTAAGGCATGGTTGACATTGAAAACTAACCAGCTCACCAGCTCACTTTTCAGGCTTTCTCTGAGCTGATTCTTTAGTCGGGACAAGTCTTCGAAACAGAGAAACTTGTTTTTTAAAAAGTAAATAAAGGGGTTGGGGATTTAGCTCAGTGGTAGAGTGCTAGCCTAGCAAGCGCAAGGCCCTGGGTTCGGTCCCCAGCTCCGAAAAAAAGAAAAAAAAAGAAAAAAAAAGTAAATTAAAAAAACCCTATTATTCTACTTCACATACACACACCCCCAACTGTTTCATTAGCCTGCCTGAGATTCAGAATCTGACCCTTCATTTCCTAGATTCAGGTCCCAGAGGGGAGGAGCAGTTGTATAAGGTCACTAAGCTGCCTTCAGTGTGGCCTCCTGACTCCTCCTTTCTTGTACTGTCTGTGTCCACCATATATAAGAACAGGAAGCTGTCTAGGAACCAGACTTGGATCACATCTGCTAAGGCTTATCACAGAAGCAAGCCCGGCAGCCAGGTGGTTCTTATTGGAACCACATGCAAGGAAACTGGCATGTTATGAAACTCATAGCTTTCTACTCTTTCAG
Seq C2 exon
GTAACATCAAAAGAAACAACAATGGAGAATATCCCAGAAGATGGGGCCTACATCAAAGGACTTTTCCTTGAGGGTGCCCGTTGGGACAGGACAATCAGGCAGATTGGAGAATCTCTCCCCAAAATCCTCTATGACCCATTGCCCATCATTTGGCTGAAACCCGGAGAGAGTGCATCATTCCTGCATCAGGACATTTACGTGTGTCCAGTGTATAAGACGAGTGCTCGGAGAGGCACCCTCTCTACCACTGGCCACTCTACTAACTATGTCCTGTCCATTGAGCTTCCAACAGACATGCCCCAAAAGCACTGGATAAACCGAGGCGTGGCCTCGCTGTGCCAGCTGGATAACTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000054843:ENSRNOT00000080401:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]