BtaINT0050542 @ bosTau6
Intron Retention
Gene
ENSBTAG00000018560 | DNAH3
Description
Bos taurus dynein, axonemal, heavy chain 3 (DNAH3), mRNA. [Source:RefSeq mRNA;Acc:NM_001099199]
Coordinates
chr25:18838854-18845376:-
Coord C1 exon
chr25:18845239-18845376
Coord A exon
chr25:18839208-18845238
Coord C2 exon
chr25:18838854-18839207
Length
6031 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGG
5' ss Score
7.81
3' ss Seq
CACAGCTTCCTGTCTTTCAGGTA
3' ss Score
10.07
Exon sequences
Seq C1 exon
GAATGGATTGACAATGGACCTCCTGTGGTCTTTTGGATCTCTGGATTCTACTTTACACAGTCTTTTTTGACAGGTGTCTCTCAGAATTATGCTCGGAAATACACCATCCCCATTGACCACATTGGATTTGAGTTTGAG
Seq A exon
GTAGGGGCATTTTAGGGTACAACGACTCAAAGGGACAACCAGAGAAAGCAGTGTTGTCCATTTCTTTGAGTCCAAACATTTAGATGTGTTAAGGTTCAACTACTTCTGAGATGATACAAATGAAGTATTTAGCATGACTTAAAGTAGCTCCAAGGAGAAGGAAATGGCAACTCACACCAGTATTTTTGCCTGGAGAATCCCAGAGACAGAGGAGCCTGGTGGTCTGCCGTCTAAGGGGTCACACAGAGTCTGACACGACTGAAGCGACTTAGCAGCAGTAGCAGCAGCAGCTACTTTGGAGCAAAGTAGCTCCAAAAATTATCCCCAACAGAACCAGAGGATTCCCAATGCTTTGTCTCTTGTGTATATAAAAAAGGAATCTTTCCAGAGGAAAACTCTTCCACAGTTGTACCCAAGACAATGAAAGCATATTCCATACTGTCTATTCAACATGGTGGACTTTTCATCTGGAAGGATGTTAAAGGTCTTGTGTAGGGCTTTGCTAAAAGTCAAAGGATGCCAATAGTCAAGAATCACCCAATCCATGTTTGGAGAGAAAGGAGTAAGACAGACTTTAATAGAGCATTGTAGAATTTTAAATTTTATGGAAAGATCCTATGTGATCATCTCATCCAGAAATCACAAACTAATTGCCTTAGATATTAATTTAGTTTATAAATGAACTTGACTGGCCTTTGTTGTTGTTGTTGTTCAGTCACTCAGTTGTGTCTGACTCTTAGGGACCCCATGGATGCACACCAGGCTTCCCTGTCCTTCACCACCTCCCAGAGCTTGCTCAAACTCATGTCCATTAAGTCAGTGATACCACCCAACCATCTCGTTCTCTGTCGTCCCATTCTCCTCCTGCCTTCAATCTTTCCCACCATCAGGGTATTTTGTAACAAGTCTGCTCTTTGTATCAGGTAGCCTAAGTATTGGAGCTTCAGCATCAGTTCTTCCATTGAATAGGGTTAATTTCCTTTAGGATTCACTGATTTGATCTCCTTGCAGTCCAAGGGAGTCTCAAGAGTCTTCTCCAACACCACAGTTCAAAAGACCAATTCTTTGGCGCTCAGCCTTCTTTATAGTCCAACTCTCACATCCATATATGAATAGTGGAAAAACCATAGCTTTGACTATATGGACCTTTGTTGGAAAGGTAGTGTCTCTGCTTTTTAATATGCTGTTTAGGTTTGTCAAATCTTTCTTCCAAGGAGCAAGCGTCTTTTAATTTCATGGCTGCTGTCATCATCTGCAATGAGTTTGGAGCCCAAGAAAATAAAGTCTGTCACTGTTTCCATTGTTTCCCCAACTATTTGCCATGAAGTGCTAGGACCAAATGCCATGATCTCACTTTTTTGAATACTGAATTTTAAGCCAGCTTTTTCACTCTCCTCTTTCACCTTCATCAAGAGGCTCTTCAGTTCCTCTTTGCTTTATACCATAAGGGTGGTATCATCTGCATATCTGAGGTTATTGATATTCTCCTGGCAATCTTGATTCCAGCTTGTGCTTCATCCAGCCTGGCATTTCACATGATGAACTCTGCATATATGTTAAATAAGCAGGGTGACAGTACACAATCTTGACATACTCCTTTCCCAATTTTGAGCCAGTTTGTTGTTCCATGTCCGGGTCTAACTGTTCCTTCTTGACCTGCATAGGTTTCTCAGGAAGCAGGCAAGGGGGTCTAGCATTATCATCTCTTTAAGAATTTTCCACTGTTTGTTGTGATCCACACAAAGGCTTTAGCATAGTCAATGAAAAAGATGTTTTCCTGAATCTTTCTTGCTTTTTTGATGATCCAATAAATGCTGGCTATTTGATCTCTGGCTCCTCTGCCATTTATAAATCTGGCTTGAACATCTGTAAGTTCTTAGTTCACGTACTGTTGACGCCTACCCTGGAGAATTTTGAGCCACTTGACTTCACACTCCATGATGTCTGGCTCCAGGTGAATGATCACACCATCATGGTTATCTGGGTCATGAAGATCTTTTTTGTATAGTTCTTCTGTGTATTCTTGCCACCACTTCTTAATATCCTCTGCTTTAGTTAGGTCCATACCATTTCTGTCCTTTCTTGTGCCCATCTTTGCATGAACTGTTCCCTTGGTATCTCTAATTTTCTTGAAGAGATCTCTAGTCTTTTTCATTCTGTTGTTTTCCTCTATTTCTTTGCACTGATCACTGAGGAAGGCTTTTTTATCTCTCCTTGCTATTCTTTGGAACTCTCCATTCAGATGAGTATATCTTTACTTTTCTCCTCTGTGTTTCACTTCTCTTCTTTTCTCAGCTATCTGTAAGGCCTCCTCAGACAACCATTTTGCCTTTTTGCATTTCTTCTTCTTGGGGATGGCTTTGATCACCACGTCCTGTACAGTGTTACATACCTCTGTCCATAGTTGTTCAAGGGCTCTATCAGGTCTATTCCCTTGAATCTCTTTGTCACTTCCACTGTATAATCGTAAGGGATTTGATTTAGGTCATACTTGAATTGCCTTGTGGTTTTCCCTACTTTCTTCAATTTAAGCCTGAATTTTGCAATAAGCTCATAATCTGAGTCACAGTCAGCTCCTGGTCTTGTTTTTGCTCACTGTATAGAGCCTCTCCATCTTTGGCTGCAAAGAATATAACCAACCTGATTTCGGTATTGACTATCTGGTGATGTCCATGTTTAGAGTCATCTCTTGTGTTGCTGAAAGAGGGTGTTTCCTATGACCAGTGCATTCTCTTGGCCGAACTGTTAGCCTTGCCCTGCTTTATTCTGTACTCCGAGGGCAAACTTGCCTGTTCCTCCAGGTATCTCTTGACTTCCTACTCTTGCATTCCAGTCCTGTATGATGAAAAGGACATCTTTTTTTTTTTTTTTTTTGGTGTTAGTTCTAGAAGGTCTTGTAGGTCTTCACAGAACCATTCAACTTCAGCTTCTTTGGCATTGGTGGTTGATGCACAGACTTGGATTACTGTGATACTGAATGGTTTGCCTTGGAAACAAACAGAAATCATTCTGATTTCTGATTTCAATACTTGAGACTGCACTCAAGTACTGCATTTCAGACTCTTCTGTTGGCTATGAGGGCTACTTTATTTCTTCTGAGGAATTCTTGCCCACAGTAGTAGATATAATGGTCATCTGAATTAAATTTTGCCCATTCCAGTCCATTTTAGGTCACTGATTCCTAAAATGTCAATGTTCACTCTTGCCATCTCCTGTTGACCACTTCCAATTTACCTTGATTCATGGACCTAACATTCCACGTTCCTATGCAATATTGTTCTTTACAGCATGAAACTTTACTTTGAATGCCAGACACATGCACAACTGGGCATTTTTTCCACTTTGGCTCAAACTCTTCACTCCTTATGGAGCTGTTTCTCTGATCTTCTTCAGTACCATATCGGGCACCTACCGACCTGGGGATTTCATCTTTCAGTGTTATATCTTTTTGCCTTTTCATACACTCATGGTGTTTGAAAGGTTGTGGCTGTGAGCCATGTGTTACCCTGGGATTCATGACATCGGAGAGGATTTCAATCCGGGGCCAGAGACAAGTCTTGACTACTCAGAGCTTCTTGTGTGGCTAAGTTTTATTAAAGTATAATAGAGATAGGGAAAGCTTCTGACATAGACATCAGAAAGGGACAGAGAGAGTGCCCAGTTGCTAGTTTTTAGCAAAGCATTTTCTGTCTGTTAGCAATTTTCTAATCAGAAGAGACACACCTCAAATCTGAGGGAGTTTCACCAGGCCCCTCTCCCACAATATACATTTTGAGATAGAACAGGACAAAGTGTGGCATCCTCCAGCCATAAAGTAATTGACATGAATACTGGTTTGTTGAGTCATTATCAGCCCAAGCTTTGAAAAAAAAAAAAAGTCTTGGGTGGAACCCATTTGAAGAAAGGCAAATTCTAAAGCAAATACGTAGTTTCATTAACATAGCTTAAGAAAAACATTTCCATAATAAAGCAGCACTGGTTAGCTCAAGGTCTGAGAAAAGTTAAGTTCAGGCAGAACCAGGTGTTGTCAGCAGAGAATGGAAAAAAGTCTGCCACTTGCAATTGATTTTCTCCTACAGCTTGGGGACCTCTTACCGAGGCTGTTAACACCCTCAGGTTCTCAAGGCAAGAATCAGATCAGATCAGATCAGTCGCTCAGTCGTGTCCAACTCTTTGCGACCCCATGAATTGCAGCACACCAGGCCTCCCTGTCCATCACCAACTCCTGGAGTTCACTGGGACTCACGTCCATCGAGTCAGTGATGCCATCTAGCCATCTCATCCTCTCTCATCCCCTTCTCCTCTTGCCCCCAAATCCCTCCCAGCATCAGAGTCTTTTCTAAAGTGGTTTACCATTCCCTTCTCCAGTGGACCACGTTTTGTCAGAACTCTCCACCATGACCCATCCGTCTTGGGTGGCCCTACATGGCATGGCTCATAGTTTCATTGAGTTAGACAAGGCTGTGGTCCATGTGATCAGTTTGGCTAGTTTTCTGTGATTGTGGTTTTCATTCTGTCTGCCCTCTGGTGAATGAGGATAACAGGCTTGTAGAAGCTTCCTAATGGGAGGGTCTGGCTGTGGGGAAAACTGGGTCTTGCTTTGGTAGGTGGGGCCATGCTCAGTAAATCTTTAATTTTCTGCTGATGGTGTGTGTGTGGGGGGAGAGCGGTGCGGGGACAACACGGTGTGTTCCCTCCCTGTGGTTTGGCCTGAGGCCACACTATGGTAGAGGTAATGGTGACCTCCTTCAAAAGGACTCCCAGGACTGTTGTAGTCCGTGCCCCTGACCTCATGGCAGGCCACTGTCAACCCATGCCTCCGCTGGAGACTCCTGGACACTCACAGGCATGTTCGGCTCAGTCTCTTGTGGGGTAACTGCTCCTTTCTCCTGCATCCTGGTGCACACAAGGTTTTGTTTGTGCCCTCCAAGTGTTTGTTTCCCCAGTCCTGTGGAATTTCTGTAGTCAAATCCCACTGGCCTTCAAAGTCAAATTCCTGGGGTTCTCAGCCCTTTTGCTGGATCCCCAGGTTGGGAAATCTGTTGTGGGCCCTAGAACTTTTGCAACAGTGTGAGCACTTCTTTGGTATAACTGTTCTCCAGTTTGTGGGTCGTTTGTTCGATGGCTCTATAGTGGAGCTAATGGCGACCTCCTCCAAAAGGACTTATGCCACATACCATGCCTCCCAGGTCTGCTGCCGCCAGAGCCCCTGTCCCCACAGGAGGCCACTGCTGACCTGTGTCTCCGCAGGAGAACACTCAAATGCTCAAAGGCAGGTCTGGCTCAGTCTCTTGTGGGGGTCACTGCTCCTTTCCCTTGGTCCTGGAGTGCACAAGGTTGTCTGTGCCCTTCAAGCATCTCTGGCAGGTCTGAGGTTTGATTCTAAATGTGATTTTGCCCCTTCTATCATCTTGTCAGGGCCTCCCCTTTGCCCTTGGATGTGGCTTTTTTTTTTTTTTGGTGGGATACTACATTCTCCTGTCAATGGTTGTTCAGCAGCTAGTTATGATTTTCCTGTTCTCACAAGAGAAGATGAGCACACGTCCTTCTAATCCGCAATCTTAAAGTTTATCAGCTCTGAATCTAATGGTATGCTGGGGGCTGGCTCATACTAACTCACCAGAGCCAGTTACAGGTGGTTGTTAAATAATGGATATGCTGAAATTGATCATGGTGGGGTCTTTACACCACAGAAATTGACAGAAACTACAAATCAAAATTTTACTTCTTCTACTAGAGAACTATTTTACCAGCATGCAGCTTAATCTAACCCCTCACTTTACAGATCCATATTCATAAAGGGGAAAGATTATACAAGGCCACTAAGCTAGGTAATAGTTAATGTGGCCTGTGGTTCTTGCTGACTGGAAATCAGACATGGCCCATGTAGCATGTAGGAATATTATCAGAGAAGTCTCAGTGTCCTGGGAGACGGACAGTAAAGCCAGTTTTTACCTTTTCAGTCTCTTAATGCTGCCTCATTTAGGAAAATGGCAGGTAACAATGGAACTCACAGCTTCCTGTCTTTCAG
Seq C2 exon
GTAACCACACAAGAAACAGTCATGGAGAGTAACCCAGAAGATGGGGCCTACATAAAAGGACTCTTCTTAGAAGGTGCCCGTTGGGACAGGAAAAAAATGCAGATCGGGGAGTCTTTCCCCAAAATCCTCTATGATCCATTGCCCATCATTTGGCTGAAACCTGGGGAAAGTGCAATGTTTCTGCATCAGAACATTTATGTGTGTCCAGTCTACAAAACAAGTGCCCGGAGAGGTACCCTCTCCACAACAGGGCACTCCACCAACTATGTCCTATCCATTGAACTCCCAACTGACAGGCCTCAGAAGCACTGGATAAACCGAGGAGTAGCCTCTCTGTGCCAGCTAGATAATTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018560:ENSBTAT00000024702:61
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(6.3=100)
A:
NA
C2:
PF0302810=Dynein_heavy=PD(15.9=95.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]