HsaINT0049731 @ hg38
Intron Retention
Gene
ENSG00000158486 | DNAH3
Description
dynein axonemal heavy chain 3 [Source:HGNC Symbol;Acc:HGNC:2949]
Coordinates
chr16:20933111-20935485:-
Coord C1 exon
chr16:20935348-20935485
Coord A exon
chr16:20933508-20935347
Coord C2 exon
chr16:20933111-20933507
Length
1840 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGG
5' ss Score
7.81
3' ss Seq
ATAGCTTTTTATTCTTCCAGGTA
3' ss Score
8.64
Exon sequences
Seq C1 exon
GAATGGATTGACAAGGGGCCCCCTGTGGTATTTTGGATCTCTGGATTCTACTTCACACAGTCTTTTTTGACTGGCGTCTCTCAAAATTATGCCCGGAAATATACCATCCCCATTGACCACATTGGATTTGAGTTTGAG
Seq A exon
GTAGGGGTGCTTTGGGTTAGGCTCACTCAAGGGGCTGACCAGAGAAAGCAATGTTGCCAATTTCCTTATGAGTCAAAAAATGTGGATGTGTTAAGACCCAAATGCTTCTGAAATGGTACATATGAAGCATTTAGCATAATTTACAGTAGCTCTAAAAGCTACTCCTAAAATAATTAGAGGATTCCCAATGCTTTGTCTCTGTGTATACAAAAAGGGAATCTTTCCAGATTCCGTCAGAACACCAAGAAAAATGAAGGCACTCTCCCACTCTGTTTGTTCAATGTGGTGGACTCTTCATTTACAAGAATGTTAATGCCCTTAGGTAGTCCTTTGCTTGGAGTAAAGTTAAAAGCATGGCCAACAGTCAAGCATCAGCCTGTCATATATAGAGAGTAGAATGGCTACGATTGACTGTTACAGAGCATTGTAGAATTTTAAATTATACGGAAAGATCCTTTGAAATCATCTAGTCCAGAGGTCACAAACTGGTTGCCCTATGTCTTAAATCAGTTTATGAATGAACTTAACTTGATTAGCCTTTGAAGACAATGTTAAGCCAAAATAAATACAACAAGAAAAAAAATGACTAGGATAAACATTGAAAAAAAGATAAAACCATCTTTCTTGATGTTGAAATGATTGTATACCTAGAAATCCGAAGTGATTAAAAACATAGAGTCCTTTACTTGCAATGGTTCAACTTACAATTTTTTGACTTCATGATGTGAAATCAGTACACATTCAGGAGAAACCACACCTTGAGTACCCATACACCCATTCCATTTTTCACTTTTAGTATAGTATTTGATAAATTACATAAGATACTCAACACTTTACTATAAAACAGACTTTGTGTTAGATGATTCCTGCCCACTATAGGCTAATGTAAGTGTTCTAAGCACATTTAAGGGAGGCTAGGCTAAGCTATGATATTTGTTGTAGGTTAGGTATATTAAATGCAGTTTTGGCTTACAATATGTTCAACTTATGATGGGTTTATCAGGACATAACCCCATTGTAAGTTGAGGAGCATCTGTAGAAGAATTCACAAGGTCACTGGATATTGGTTAAATTTATAAAAATCAATAGCCTTTTCCTATTCTTCCAATATATACTTAGAATTAGAAATGGGAAAAAATTCCATTCACCATAAAAATTTTTTAAAGTATAATTTGAATGATTTTAAATGGAGTTTGTGCTCTCTGGTTCACCATAATCCCCACCCCTCCCTATTCTCCTATGCTTTGTCCATTTTCTGCAATTACCTAAAGGAATTTGAGTTTACCACCTCTGAATCTAAGCAGTGGTGTGCTGGAGCTCACTCATATCAGCTCACCAGGGCCAACTGTTACATTTTCAGGAATTTTGTGAGCTGGTTGTTAAATAGTTGGTAGGCTGAAATTGACCATGGTGGAAGTCTTTATACCACAAAAACTAGAAATCAAGGCTTTATTCTCCCCACACTCATCTCCAGAACTGTTTATCCAGTCTGTCTCTGTATCTGAATCTAACCCCTCACTTTATAAATCCAGATCCAGAAAGGGAAGGGATTGTGCAATCACTAAGCTAGTTAGAGGTAATGTGTTAGAATAATGTGACTCCTACTTGAGTGCATTCTCTAGCCCACCATTGGGAAGGGCAGCATACTGACCAGGAGTCAGGCCTGGCCCATGTATGGTGGGCAGGAATATTATCACAGAAGCCCCATTGTCCCTGGATCCTGGGAGAGGTAGATATTGCAACCAGGTTGCACTTTGAGTATCAGAAGATTCCAGGCTCTTAAAGCTGCCCATGTAGGAAAATGGCAGGCAATGGAGCTCATAGCTTTTTATTCTTCCAG
Seq C2 exon
GTAACCCCACAAGAAACAGTGATGGAGAATAACCCCGAAGATGGGGCCTACATCAAAGGGCTCTTCTTAGAAGGTGCCCGTTGGGACAGGAAAACGATGCAGATTGGGGAATCTCTCCCCAAAATCCTCTATGACCCACTGCCCATCATTTGGCTGAAACCTGGGGAGAGCGCAATGTTTCTGCATCAGGACATCTATGTGTGTCCAGTCTACAAAACAAGTGCCCGCAGAGGAACCCTCTCCACCACAGGCCACTCTACCAACTATGTCCTCTCCATTGAGCTTCCAACAGACATGCCCCAGAAGCACTGGATAAACCGAGGGGTGGCCTCACTGTGCCAGCTGGATAACTGATGGCATTTGTCTCAAGACAGAAAATAAAAAGCATTTCATTCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000158486:ENST00000261383:61
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.009
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(11.6=100)
A:
NA
C2:
PF0302810=Dynein_heavy=PD(15.9=95.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCGGAAATATACCATCCCC
R:
GGCATGTCTGTTGGAAGCTCA
Band lengths:
347-2187
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development