GgaINT1011552 @ galGal4
Intron Retention
Gene
ENSGALG00000002350 | DNAH3
Description
dynein, axonemal, heavy chain 3 [Source:HGNC Symbol;Acc:HGNC:2949]
Coordinates
chr14:14983212-14983970:-
Coord C1 exon
chr14:14983833-14983970
Coord A exon
chr14:14983661-14983832
Coord C2 exon
chr14:14983212-14983660
Length
172 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
3' ss Seq
AAATGGTTTCATCTTTCCAGGTG
3' ss Score
9.1
Exon sequences
Seq C1 exon
GATTGGGTCATCAATGGGCCACCCACTGTCTTTTGGCTGTCAGGATTCTACTTCACTCAGTCTTTTTTGACAGGTGTTTTACAAAACTATGCCAGAAAATACACCATCCCCATTGACCGCATCGGATTTGAATTTGAG
Seq A exon
GTAAGAACACGTGGAAGAACTTTGCTTTTCTTGAGCAGCTTGAAAGATGTTCTGGGGCAGCAGGGAATGGAGTTTTCAAAAGAAATCCTGTCATGGGGTTTAATATACTTCAAATAAATATTAATATACTCCAAATAAAAATGAAACAAAGCAAATGGTTTCATCTTTCCAG
Seq C2 exon
GTGATGAAGCAGGAGAACACAATGGAGAAAATACCGGAAGATGGGGCTTACGTGAAAGGCCTTTTTTTGGAAGGTGCACGATGGGATCGAGAATCCGCGGTGATTGGAGAATCGCTTCCAAAAATCCTATATGATCCCTTGCCCATAATATGGCTGAAGCCCGGAGAAAGTTCCAGGTTTCTTCACATGAACATCTATTCCTGCCCTGTGTACAAGACGAGTGCAAGAAGAGGCGTCTTGTCCACTACCGGCCACTCAACCAACTACGTTCTGTCTGTCGAGCTCCCTTCAGCGCAGCCCCAGAAGCACTGGATAAACCGAGGTGTGGCAGCGCTGTGCCAGCTCGATGACTGAGACAGCTCAGTGCACTCTTCATTCGCAATTAAAAGATACGCTTTGCTCCCTAGTGGCTGTTTGTTGGTCTTTTTGTTACTTATTTTTATTTGTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002350:ENSGALT00000003708:60
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(6.3=100)
A:
NA
C2:
PF0302810=Dynein_heavy=PD(15.9=95.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTGGGTCATCAATGGGCCAC
R:
CAATCACCGCGGATTCTCGAT
Band lengths:
243-415
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]