RnoINT0001341 @ rn6
Intron Retention
Gene
ENSRNOG00000056177 | AABR07010085.2
Description
NA
Coordinates
chr2:122711613-122715522:-
Coord C1 exon
chr2:122715308-122715522
Coord A exon
chr2:122711836-122715307
Coord C2 exon
chr2:122711613-122711835
Length
3472 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
3' ss Seq
TATCTTTGCACTCTTCTCAGAAC
3' ss Score
7.95
Exon sequences
Seq C1 exon
GCACAAGCAGCGTATGAGGACAAGCTAGAGAAGCTAAGACACAAACAGAACGCTTCGGTGCGAACTCAGATGGAGCTCAGAATAAGGGACCTGGAGTCTGAATTCTCTAAGATGAAAAGCCAAGTTGACTGTAATCAAATAGAAATGGAAAACTACAAGCAGCTCTACCTAGAAGAAGTGAAAATTAGAAAATCGTTGTCAAATAAATTAAGCAA
Seq A exon
GTAAGTCACAACTCACAGAAGATAAGTTAAGCTCAGGATTCTGTCCCTAGAACACAATTGTTGGTAAAATGGGTTATAGCAATCGGAGTGGAAATCAACTGTAGGATGTAAATTTGTAGGCTGGTGCTGATGCCCCGTCAGAGTTCTGTTCTAACGTGTGCAGTGCCCACCCCGTGTCCCACAAAGTTACGAAGGAAAAGAGAATATAATTTTAGAAAAAAAGATCAATGACATAAGTGATCTGAAGGGGTTGGAGGGATGGCCCCAATGTCTAAGAGTGCATGCTGTTGAGCCACCGAGTTCAGTTCCCAGCCTCCGCATCAGGCAGGCCACAGCGCCTGTAATTCCAGCTCCGGGGGAGCCAGTGCTTCAAGCTCTGCCAGCACCTGCGGTTATGTGAGCATGCACATAGTCGTCCTTTTAAAAACATTAATAGCTTCGTCCATGTCAACTTATATCTCCTTTTCTTTCTATATAGCTTTTTCATCCTTCCTCATGCTATCCTATAGTTAACCTGGCATATTGCTAAGGCTCTGTATTTCATATCCCCTCATTACCAAATTTCTGCTTATCACCCTCTCAGAAAGAAACATTGAAAGGTTGGAAAACTACAGCTTGGGTCATGGGATACTGTTACTGTTGCAGTGGGCACATCCTTGTCACTGGCAAATTAACTCTCCTTCCTTATGTTTGTTACCACTGAGGGTCCCTAGACACAGACTCTCCTGTAGAGTTCTCTACTGTGCCTTAAAGCATAGCTTTGTCCCAGGAAAACACTAGCCTAAGACTAGAGGAAAGTGTACTTTGGGACATGGTAAGACACAGTTTCCTACTCAGGACTGAGTAGAAGACAGGAAGGGTGGAAGCCGCCTGTAACATCTTGGCAAATGAGTAACGACCACGTTGTCCTCAGAGGTGCTTTGGCTGTTCGAGATCACTGACTGGACCACCTTATGACTAAAGATGCATTTCCCTTATGACTAAAGATGTTGAACATTTCTTTAGGTATTTCTCAGCCATTCAGCATTCCTCAGCTGTGAATTCTTTGTTTAGCTCTGAACCCCATTTTTTAATAGGGTTATTTGTCTCCCTGAGGTCTAACTCCTTGAGTTCTTTGTATATTTTGGATATAAGGCCTCTATCTGTTGTAGGATTGGTAAAGATCTTTTCCAAATCTGTTGGTTGCCGTTTTGTCCTAACCATAGTGTCCTTTGCCTAACAGAAGCTTTGCAGTTTTATGAGATCCCATTTGTCGATTCTTGATCTTAGAGCATAAGCCATTGGTGTTTTGTTCAGGAAATTTTTTCCAGTGCCCATGTGTTCCAGATGCTTCCCTAGTTTTTCTTCTATTAGTTTGAGTGTATCTGGTTTGATGTGGAGGTCCTTGATCCTCTTGGACCTAAGCTTTGTACAGGGTGATAAGCATGGATCAATCTGCATTCTTCTACATGTTGACCTCCAGTTGAACCAGCACCATTTGCTGAAAATGCTGTCTTTTTTCCATTGGATGGTTTTGGCTCCTTTGTCAAAAATCAAGTGCCCATAGGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCATTGGTCTATCTGTCTGTCTCTGTACCAATACCACGCAGTTTTTATCACTATTGCTCTGTAATACTGCTTGAGTTCAGGAATAGTGATTTCCCCCTGAAGTCCTTTTATTGTGGAGGATAGTTTTAGCTATCCTGGGTTTTTTGTTATTCCAGATGAATTTGCAAATTGTTCTGTCTAGCTCTTTGAAGAATTGGATTGGTATTTTGATGGAGATTGCATTGAATCTGTAGATCGCTTTTGGTAAAATGGCCATTTTTACTATATTAATCCTGCCAATCCATGAGCATGGGAGATCTTTCCATCTTCTGAGGTCTTCTTCAATTTCTTTCTTCAGCGTCTTGAAGTTCTTATTGTACAGATCTTTTACTTGCTTGGTTAAAGTCACACCGAGGTACTTTATATTATTTGGGTCTATTATGAAGGGTGTCGTTTCCCTAATTTCTTGGCTTGTTTCTCTTTTGTGTAGAGGAAGGCTATTGATTTATTTGAGTTAATTTTATACCCAGCCACTTTGCTGAAGTTGTTTATCAGCTTTAGTAGTTCTCTGGTGGAACTTTTGGGATCACTTAAATATACTATCATATCATCTGCAAATAGTGATATTTTGACTTCTTCTTTTCTGATCTGTATCCCCTTGATCTCCTTTTGTTGTCTGATTGCTCTGGCTAGAACTTCAAGAACTATATTGAATAAGTAGGGAGAGAGTGGGCAGCCTTGTCTAGTCCCTGATTTTAGTGGGATTGCTTCAAGTTTCTCTCTATTTAGTTTAATGTTAGCAACTGGTTTGCTGTATATGGCTTTTACTATGTTTAGGTATGGGCCTTGAATTCCTATTCTTTCCAGGACTTTTATCATGAAGGGGTGTTGAATTTTGTCAAATGCTTTCTCAGCATCTAATGAAATGATCATGTGGTTCTGTTCTTTCAGTTTGTTTATATAATGGATCACGTTGATGGTTTTCCGTATATTAAACCATCCCTGCATGCCTGGGATGAAGCCTACTTGATCATGGTGGATGATTGTTTTGATGTGCTCTTGGATTCGGTTTGCCAGAATTTTATTGAGTATTTTTGCGTCGATATTCATAAGGGAAATTGGTCTGAAGTTCTCTTTCTTTGTTGGGTCTTTGTGTGGTTTAGGTATAAGAGTAATTGTGGCTTCATAGAAGGAATTCGGGAGTGCTCCATCTGTTTCAATTTTGTGGAATAGTTTGGATAATATTGGTATGAGGTCTTCTATGAAGGTCTGATAGAATTCTGCACTAAACCCATCTGGACCTGGGCTCTTTTTGGTTGGGAGACCTTTAATGACTGCTTCTATTTCCTTAGGAGTTACGTGGCTGTTTAACTGGTTTATCTGTTCCTGATTTAACTTCGGTACCTGGTATCTGTCTAGGAAATGGGGTTTTTATTATTATTATTATTATTATTATTATTATTATTATACTGATTTACTCAACTCATTTATTTCTCACTTCTTCTCTCGTCTCTCGACCTTCTCACAAAGCAGAATGGTGGTTAAGCAGATGAGCTAACACACGTGTCTTTCCACAGTTACCCTTTTCTTGCATTTCTAAGACATCCGGGATCTTAGGCATAGGACTTTTCCAGAAGTCTGCAGTATAAGTGTTGAGCCACGTGTCATCGACAGATGTCTCTCTCCTCCACACGGATTGAACTGCTTGCTTGTTGTTCTCCTAGGTATACAAGCATGCCCTGCTTTAGAACGGTTTTTACACTGTACTTAGATGCACTGTATATGCCCTGACACAATTCAAGTTCTACGATCCTGTCACTGGGGAGTGCCATTAACTCTTTTTAAATATAGGTTATTTATGATCAGTTCTGGAACACAAGGCATGGAGAATTTATCTTTGCACTCTTCTCAG
Seq C2 exon
AACAGATGAAAGACTGGCAGAGGTCAAGACCAAACTTCTCCTAGAGAGAAAACAGAACAGAGCTTCACAGTACAGCATGGTTGACATAAGACCCGTCCTGGAGTCCACCTGTCCAAGAGACAGTAATAGATTTTTCACTCCAAGAAGCTTCTCTAGAGAAAATATGCTTTCTACATCAAACCTCTGGCTTTCAGTTGAGACCATGGAAAACTGCAAGACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000056177:ENSRNOT00000080181:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.042 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF120013=DUF3496=PU(48.1=72.2)
A:
NA
C2:
PF120013=DUF3496=PD(50.9=73.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]