RnoINT0010315 @ rn6
Intron Retention
Gene
ENSRNOG00000046890 | Abca6
Description
ATP binding cassette subfamily A member 6 [Source:RGD Symbol;Acc:1308998]
Coordinates
chr10:98520044-98520671:-
Coord C1 exon
chr10:98520561-98520671
Coord A exon
chr10:98520220-98520560
Coord C2 exon
chr10:98520044-98520219
Length
341 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
3' ss Seq
TTTTAATTTCTCCTTTTTAGGGT
3' ss Score
12.21
Exon sequences
Seq C1 exon
GCTTGTTCTTCGATGTCTATGAGAGTCAAATCACAGCAGTTCTGGGCCATGGTGGAGCAGGCAAATCTTCATTGCTAAACATCCTCAATGGACTGTCTGTTCCAACTTCAG
Seq A exon
GTAAGCAGAAAGCAACACCTTGCAGACAAGCTCTCTGCTAAGGGAACAAGGGTGGATTCCACAGCTCGATGATTATCTAAAGCTGTTTCCTAGAACTATAGGACTTTGAACGGACTTCCCAGTACCCAGATTTCACAGGACTCACTTGTAGCCCATTGTGTGTTCTCTCAGAGAAAACGGGCTGCATGGTACTTAGGCTAAGAATAGTAGTAGTAGTTTTTAGCCAAGTTGTAATTTTATGTATTTGTGAGTGGATGTCACAGTTTTGTTGAGTGAGATCTCCAAATACAAATGAAATGCCGCCTTGCTAACCTTGAACTATTTTAATTTCTCCTTTTTAG
Seq C2 exon
GGTTAGCCACGGTGTACAATAAAAATCTCTCTGAGATGCAAGACTTGAAGGAAATCAGAAAGATGATTGGTGTTTGTCCTCAACATAATGTGCAATTTGATGCGCTCACTGTGAAGGAGAACCTTACCCTCTTCGCTAATATAAAAGGGATCGTTCCGCAGAGCGTAGCGCAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000046890:ENSRNOT00000073149:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=FE(25.2=100)
A:
NA
C2:
PF0000522=ABC_tran=FE(39.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTGTTCTTCGATGTCTATGAGAGT
R:
GGAACGATCCCTTTTATATTAGCGA
Band lengths:
268-609
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]