RnoINT0010329 @ rn6
Intron Retention
Gene
ENSRNOG00000046890 | Abca6
Description
ATP binding cassette subfamily A member 6 [Source:RGD Symbol;Acc:1308998]
Coordinates
chr10:98492678-98497748:-
Coord C1 exon
chr10:98497635-98497748
Coord A exon
chr10:98492798-98497634
Coord C2 exon
chr10:98492678-98492797
Length
4837 bp
Sequences
Splice sites
5' ss Seq
ATTGTAAGT
5' ss Score
8.54
3' ss Seq
TTCTTGTACTTGCCCCGTAGGTC
3' ss Score
9.92
Exon sequences
Seq C1 exon
GTCCTTCTCGCTTTTGGCTGTGCAGCTTCTCTTGTCTTCTTGACGTACGTGATATCATTTGTTTTTGGCAAAAAGAGGAAAAACAGCGGCCTCTGGTCAATTTGCTTCTTTATT
Seq A exon
GTAAGTATGAACCTTATTAAGCACAGTCATTCCTTGTCTTGGGCAGTGGGAAAATTGAAAATGTAGATTAAATTTAAACATTCGAATCCAGTGCCCCAAACCTTTCAAAAGCTGACACGATTCCACAACAGCCAACTTCCTGTGATGCTTTCATGCCAGAATTCAAGTGCCCAGCAAAACCTACCCGGCCTTCCCTACAGATCATTTAAAGTTACGCACGTAAAGTACACGTGAAACGTCACTTAGATTTTAAGGTTTGAATTCTACTCCAAAGGCATCTCATGCGTATGCGGTTATCCCACAAGTCCAGGAACGCCTGGACTTCAAATGCTTATTGTTCTCAAAGGTTTCAAATTAAAAATTACCCTGAAGAAAGGAGGACCTGGGAATGTAACTGAGAATTAAAGAGAGGGAGGGAGAGAGTCAGGGAGGAAGGGAGGGAGAGAGAGGGAGACAGAGACAGAGAGAGAGACAGAGAGACAGAGATAGAGACAGAGACAGATAGAGAGAGGGAGACAGAGGGAGGGAGAGAGACAGAGAGAGAGAGGCAGACAGAGAGAGAGAGAGAGAGAGAGAGACAGAGAGAGACACAGAGAGACACAGAGAGACACACAGAGAGAGACAAAGAGAGACAGAGAGAGACACAGAGAGACACACACAGAGAGAGAGAGAGAGAGAGGACCAAAGTTTAAATGTGCTGTTGAGTTTTCAGAGCCTTCAGAGCCAAGGGACTCCCTTCAATATGAGAACCAGTAATGGCTCCCTAAGCCATTCTGAGGAGTAGGGGTTGTCCAACTTTTGACATCACAATATGCTCTTCTCATCTGTAAATTTGTTGGTCTACACCAGTAGCTGTCCTGGCGTGCATGTGGCCTGCACACAGCAGTTTGGGTGTGCCTGACCTGGGAAGTCTGTTCTAACCTCAAGTGTGAGAATTACAGACACCAACTTTAATTCTTAGGTTAAATAATTTATTAATACCCACATCTATTTCATAGCCATAGGTATGGTAAAAAGGAGAGCTTGTCAGGGATTATGGGAAGCTTTGTTCTATATAGTAGCCCAAGCAGTGAAGACCTGGAATGCTATTGATGCTGCCTTTAAGCTGATATTCCTGATACATGACTGAATGCCTTATCGTCTATATTGTACCTCTAAATTTTTGGAATGGGGGTCCTGAAACTATGAGAGGCACCAACCCAAGACCATCTGTGAGAAAATATACTTGTTTGATGCCATCCGCTGACTTCTACAGAAAATGGGTGGGCACAGCTGACTGATGTCCCTTATTAATATCCAGCATTCCTATTTCATGACTCTGGATTGGATCTGGCTGCATTTACCAGGGGCATCTATTACTCTTACCTTCACCCTCACAATCCATCCAAAGTAGAGAAGCTACGTACAGGACTACGGAGTACCATGTTTGAGGCTGGCCGAGAGAATCCGTGTGTCAGACACTTGAAGGCAGCTTTGATCAGCTGACAGAATTGCCGATGGTTTTCAGCTATCCCCAACACTGAGTCTGCAGAACGGATCACCTCAGAGATAATCTCACTGTAACTCACCTGGTTTTCATTTCCACTAAATACTCTTTCACGTGTCTAGCAGAAGTGAGCGAAGCAACCATACCGACTCCTTCCATTTCAACTCTGAAGGAATTATTTCTGGGAACTGGTGGTTGAGTGTTTCAGGGTCAAGGTCAATATGGCTGCTGACGAGGGTGCTGTCAGCCTTGAAGATGGCAGAGTCAATTCCTTCCCAGGTTCTCTGGCAGCTTCTTTACCTCCAGAGCCGAATAACTGGCATCCTGGAACAATGGCTTGTCTGTGACTCTTTCCTCTCCTTTTGTTGTCTCTACAGAGAAGTCACTTAAGATTTGGGTCCGGTGCTCCTCTGGCTCAGTGCTTTTGCAACCTATGGCCTTGTGAACGTAACTTACGCTAGTTTGCAGGGAGCAGACTCTGATGAAGAGACAGGCATTCATTAGCCACAGCAGAAGCATGCCTCAATACTGTGTGACCCAAAATTCACTAAAAAAGCTTAACGGCAATTCCGAGATAGTTGTAGGTCCTACTGGGATGATTGACATAATAAGGGTCTTCAGGTGATCAGAAGCAGGAAGTAATTTTTTTTAAATATAAGTGTGCCCGGAAATGTGAGAGAGGAGAAGAATAAATGTGGACAAGGGTTCCACACGTTGGCACAGAGATTACAGAACTTGCGGCACAACGAGAGCAGTCTTTCAGACTCGCCGTCTGAGACAGTTATTACGCTCTAACTTAATATATAGTTAGAAAGCACTTGGTTCTATTCTACATTGTTTTTAGTGAATGACCCATCATCCGGGAAGACATAAAGATTTGAAGAACAATGTGTGCAACCTCTAGGATGTGTGCGTGTTATTACTTTGGATTGAGTCGGGAAAGTGCATGTAGTCATTTTAGCTTTGTCCTAAACCTCTAGTCTTTTCATCTATAAAGAATCCTCTTAGTCTGATTAATAGCTTGAGGAATGTGTTCTCCAATCCAGTTCTGTGTCATTTTTTAGTTTTTTTTCAAGTTCTAATTTAATTACATTTCTCCATTTCCTTTCCTCCCTCGGGATCCTCCCGCATACCACTCCGAACTCTTCTTCAACTTGTGGCCCTTGTTTTCATTAATTGTTGCTGTAGGCATATATGTATTCGTATTCACACATATATTTCCAAATACAACCTGTTCAGCCCCCATAATATTACTTGTATGTATCTTTTCAGGGCTGGTCATCTGGTGTCGGAAAACAATCGGTGTGCTCTTCCCTGGGGAGCACCACCTCTCTGGCTCCCTGCTTTACTTAGTGGCCTATAGGGTGGCGTAGGGTTGAGTTCTCACAGGCTTTGCGCTGTACAGCTTGGCACATTAGCTGTTGTCACGCTTGTTCAGCTCATGCTTGGGTGGTCATGTTGTTGACAGTGAGCATAGCTTGTGATGTTACTAGGAGAAACAGTCTCACAGCAAAGTCTCTGATCCTCTGCCTATTTTAATCTTTCCAGCCCCCCTTCCACAATGTTCCCTGAGCCTTAGGTGCTGGAATGGTGTGCAGATGTATGCACTGGGGTGGGTCTCCACAACTCTGCATTTTGATTGGTTGTGCTGTTTTGCAGTGGTCTCCGTCTATTGCGAAGAGATGTTTCCTAGATAAGGAATAAAGACTACATGTATCTGTGGGGATAAGGACAAATGTCTATAGATTACTGGTAGGAATATGCTGGTTTAAATGGAGTAATGGTTGTCGATTCTCTTTTTTTTTTCTTTTTTCTTTTTTTTTCTTTTTTTGGAGCTGGGGACCGAACCCAGGGCCTTGCACTTGCTAGGCAAGCGCTCTACCACTGAGCTAAATCCCCAACCCCTGTTGATTCTCTTTTAACAACCACGATTTCACTAACACTGAGTAGTTAGCCAAGTTTCCATCACCAGACACTGTATCAATCTTGTCATTGTTTTACTATGACCATAGTCCATTTTGCTTTGAGGTTACAGAATCCCATGTATCTGTTGATTTTTACTTTTGTTTCTTGCATTTTTTTTGGGGAGGGGTCATATCCCAAAAGGCAAAAGGTTAATAGCTAGACTGTATAAGGAACTGAAATAATTTAATAACAGGAACACATAGTCCAGTTAGAAATGAACAAGTGGTTGGAGTAGATGCTCAAAAACAAAGTGGAATGGGTAGCAAGTATATTTTTGAAATCGATTCCCCATCAGGAAATTGCAAGTGTTATATCATTTATTTCATTTATAGCTCACACAGAAGTAACATGTAGGCAAGCATGCAGAGTAAAAGAAACATCATGCACAGCCTGTTGATGGGATGTAAGTCTATACATCCAGAACAGGGTACAGTCCGAAGGGTCCTCACTTCTGGGTGTGAATACTAAGGAGATTAAATCAGCATACCACAGAGAAAGATGCATTTCGAGCTTACTGTGTCTCTAGTTGCAATAGCAAACAAATGGCTTCACTGTTAAATGTCAATTGGTGGATGACTATGTAGAGAGTTTGCCACATAAAAATGTAAGGGTATGTTATTATGCAGCCATAGATTGAAGTACTGTCCTTTGCAGAAAGGTGGGCAGAACTTGAAGGCATTATACGGAGTGAAAGCAGATATGAAACCACAAACAGCATATCTTCTTCTCCTGACGTGAGAGCTAAGGAAAGTGCTTACAATCAGAGGAGTGGTTATTAGACGTTAGGAAAGGGGGGAGGGGAGACAGAGAGCTGATAAACCAAGTTCAGGCACTGAGTTCTAACCCACACATATCAAAAACAATCTCTAAAAGCACACTGCACAGTGGAACCAACATGAGTATGTGCACATCATACACACACACACACACACACACACACACACACACACACGCACACACACACACACACACACACACACACAGTATCAAGAAAGGATTAACTCAGAGTTTGTAAACATAAATGATAAGATGGTACGAATTACCCTAATTTAATTGGTACATATTGTATGTGTGTATTCAAATATCGCACAGGTCAGAGGTGCTGCTCAGTGGTATAGTACATGTTTAGCATCATGAGACTCAGCATTCCCTATTAAAAAAAGAAAGGTCATATAGAACACACGATATGAATAATTAACATGTGCTGTTAAAACTAATTTTCTAATGGGGAGATAATATATATATATATATATGTAAACAAAACCATTCCTTTTTTTGTCTCAGAGATAGGAAATTGTTATGGCCATGTATTTGTATTTTTATCTGGAAAATTGTGGAATCCTGTCATTTGATGTGTCACTTGTCATTCTTGTACTTGCCCCGTAG
Seq C2 exon
GTCATAACGATTATGTTTGACACGGTTTTGATGGATCCCTTCAATGAGGCACTGCTTATTTCTGCCATGATGTTAGTTCCTTCCTTTTCATTGAATGCGCTCCTGATTGTCTTGGAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000046890:ENSRNOT00000073149:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(10.2=100)
A:
NA
C2:
PF126982=ABC2_membrane_3=FE(10.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]