GgaINT1002765 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BSC3]
Coordinates
chr18:8213666-8214059:-
Coord C1 exon
chr18:8213946-8214059
Coord A exon
chr18:8213774-8213945
Coord C2 exon
chr18:8213666-8213773
Length
172 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
3' ss Seq
TTTTTTCTAATTTATTCCAGGTG
3' ss Score
11.02
Exon sequences
Seq C1 exon
ATCTTTAGTGCCATTGGTTACGGATTTTCTCTCATCTTCCTCGTCTATTTGATTGCCTTTATATTTCGCAAGGGTCGAACCAATCGTTACCTGTGTTCTTTTGTCTTTGTTCTG
Seq A exon
GTAAGTGGAAGGAATCTTCACTCTGAAACATTTGGTAACACATCTTGCCATTTGAGGTTTCACTTCAAATGTATTGAAATTCAACAGAATAACCCAAATCAGTAACAAGCAGTCTAGCTTTTAACAATTGGATACATCAATATTGGAAACATTTTTTTCTAATTTATTCCAG
Seq C2 exon
GTGAACTTCACTCTCCGCATGTTCAGTTTCAGACAGGGTTTCTTCTATATCTTCTCCACTTTGATGCCCCCATATCCGCTGCTGGGCTGGTTGACTTTCTCTACAGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000021395:ENSGALT00000034529:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTTAGTGCCATTGGTTACGGA
R:
TGTAGAGAAAGTCAACCAGCCC
Band lengths:
218-390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]