RnoINT0010414 @ rn6
Intron Retention
Gene
ENSRNOG00000004040 | Abca8
Description
ATP binding cassette subfamily A member 8 [Source:RGD Symbol;Acc:1307069]
Coordinates
chr10:98252973-98257044:-
Coord C1 exon
chr10:98256931-98257044
Coord A exon
chr10:98253093-98256930
Coord C2 exon
chr10:98252973-98253092
Length
3838 bp
Sequences
Splice sites
5' ss Seq
ATCGTAAGT
5' ss Score
10.44
3' ss Seq
TATGTTTGTACCCCGCCTAGATC
3' ss Score
5.48
Exon sequences
Seq C1 exon
ATCCCGTGTTCTGTCGGCTATGCCATATCCCTGATCTTCTTAACATACGTGATTTCCTTCATTTCTCGCAAGGGGAAAAAAAACAGCGGCATTTGGTCACTTTGCTTCTATATC
Seq A exon
GTAAGTATGTTGTCACGTGTGGACATTTAATGGGCACATGGGATATAAACTTCTAAGCCAATACTTTATGCCTCTTGTAAAAATGATCATTAATATTTTTCAATCCCAAGAACAGATAGCTTTTGAAATCTGCACCCCTCCCCCAGCCTATATTTTCACTCGACTTTCATTAAATGATCATTTTGTTTTTAAAAATATAAAATATTGATTCAGAAGGAGAAAAACAGGCATTTTTCCTGAGAGTGGAGTGATTAGAAAGGCCTCCACAGCCTACCATACTACAGATTCTGTTACAGGTATAATTAAAAGTAGATACTATGGCGTCTGGAAAGGAGGCTCTTTAGTTAAGATCACTTGCTGCTCTTGCAGAGAACCCAAGTTCAGTTCTCATCTCCCACATCAAGTGACTCACTCCTCTGTGAGTCTTGTTCCAGGAGACCTGATGCCCTCTTCTGGGTTCCATGTACAATGCACTCATACATACATACATACACACACACACACACACACATACATACATACATACTCTCACATACATGTGTGTATGTATACATATGTGTATGTATGTATGTAAACACACACACATACACACAAATAAATAAAATAAAACAAAATAAGTTAGAAAAAGCAGAAACTCCTTTTTCAAGCCCCTTAGAGGATCAATCCCACAAAGCCACATTTTTTATTTTTGTCTAAATTACACACAGCACACATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATACGTGTGTGTGTGTGTGATGTGTATGTATTGGTGTATATGTGTGTTGTGTGTGTGCATGTGGTATGTGTGTGTTCTGTGTATGGTATATGTGTGCATGTGGTATGTGTGTGTTCTGTGTATGGTATATGTGTGCATGTGGTATGTTGTGTTCTGTGTATGGTATATGTGTGCATGTGGTGTTGTTGTGTGTATGTGTGTGAGTGTATGTGTGTGTGTGATATGTGGTGGTAAGTATATGGTATGTGTGTTATGTGTGTGGTATATGTGTGCATGTGTTGTGTTGTGTGTGTACTGTGTGGTATATGTGTGTGTGTGTGAGGTGTGTGGTGTACGTGTTATGGTATGTGTGTATGTGGTGTGTGTGTATGGTGTGTGTGTGCTGTGTGCATGTGTGTGGTGTGTATATGAGGTTGTGTGTATGTGTGGTGGTGGTGGTGGTGTGTGTGGTTGTGTGTGTGTGTGTGTGTGTGTGGTGGTGTGGTGCATGTACATTTGCATGTGTGGGTTTGCTTGGGCCTGAGCATGGCTAAACCCGAAGGTCACCATTTTGCTAGGTGGGCTAGTCAGTGAGCCCAGAGGATCTGTCTGTCTTCATTCCCTAGCACTTGATGTTACAGTCACATATGCCTCTGTCTCTGTCTCTGTCTCTGTCTCTGTCTCTGTCTCTGTCTCTGTCTCTCTCTCTCAGCCTTGGGTGTGGGGATCTAAACTAGCTTCTCGTGCTGTGCATAGCAAACCACCCCACTCCCTGGCTCCAGCCTTTACTCTTAAAGTGAGGTTCTGCTCCTACCTTCAGCAGCAGCCCGACTCTGTTTTCACAGAGCTTGTTACGTGCTCTACGGGCTGATAGACTCTTAGAAGGGAATGAGAGCACTAGGTCGTTGGTTTTATGTTGACCGTTTAATAAAGTGTTTGCCTATTAATCTGTCGGTTTATGACCCTTTCTGGGGTGGACACCATCCATTTTTCTCTCCCCATCGTCTTCATTTGCAGCACACTTATGAAGTCATAAAATTTTGGCTCAGTGAATAAGTTACCTTTTGCCATTATGAAATCATTGGAAATGACAACGTTCATACACTACTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTGTGTCGTGTGTGTGCGCGTGTGTGTGCTGTGTGTAATTTANNNNNNNNNNNNNNNNNNNNNNNNNCTGCTGAAAAGGTAGAGCAGGAACCTCACTTTAAGAGTAAAGGCTGGAGCCAGGGAGTGGGGTGTTTGCTATGCACAGCACGAGAAGCTAGTTTAGATCCCCACACCCAGGGCTGAGAGAGAGAGACAGAGACAGAGACAGAGACGAGACAGAGACAGAGACAGAGACAGAGGCATATGTGACTGTAACATCAGTGCTAGGGAATGAAGACAGACAGATCCTCTGGGCTCACTGACTAGCCCCACCTAGCAAAATGGTGACCTTCGGGTTTAGCCATGCTCCAGGCCCAAGCAAACCCACACATGCAAATGTACATGCACATACACCCACACACACACACACACACACACACACACACACACACCACCACACACCACACATACACACAACCTCATATACACACCACACACATGCACACAGCACACACACCCACCATACACACACACCACATACAACATACCATAACACGTACACCACACACCTCACACACACACACATATACCACACAGTACACACACAACAACACACATGCACACATATACCACACACATAACACACATACCATATACTTACACCACATATCACACACACACATACACTACACACATACACACAACACACCACATGCACACATATACCATACACAGAACACACCATACCACATGCACACATATACCATACACAGAACACACACATACCACATGCACACATATACCATACACAGAACACACACATACCACATGCACACACACAACCAACATATACACCATACATACACATCACACACACACACACGTATACACACACACACACACACACACACACACACACACACACCATATCGAGCTCCACNNNTGCACACACCATATACTAAGAATGGAGAATGAAATCCGGAGAACAGACACTGCTGTGATTTAGAATGTAAGGGATGAACAGGATCCCAGAGGCAAGGACACCCAGCTTCTCCCGGGAGCTGGTGACAGTTTGCAGTAAGATGATGAATACAAGGAATAACCTAGGGAGAATCCTCCAGCAACTCTGCAAACTTGTACAGTTTGTAAAAACGCTGACACAAACCTCTGGAAGTGGCAGAAATGTTGAGGAGGTCATGACACATTGTTTTAAAAAAAACATGAAGGCTTTTATATGCCTATAAGTTTTTTTCTTTGCCAGAAATGTGTCTTTTTAGCATTTCTGCCTATTTTTCTCCACTGGTATAGCTAACAAAAAAAAAATAGTCTATTGCTATTGTTGCTGTGGGCTTTTTTCCAGTCAAATATCAATTTCAAATTGATGCTTCTCTTCTAAACTTGACCTCCCAGAAGAAACATATGCCAGTTTCTCCCCCTTTATCCATAGTTAAAGTCTTTTATATGGCAGAGTCTAGGTTTAATTAGTGATGGTTCGTGTGAGGAGGTCTAGGCCAAAGCAATTTTGCTAAGTTGTAAAAAGCAGAGGATGTTCATGCAAATGCTGAATGGGGAAGTCAAGAGTCGAAGTTTGGAATGAGGGACTGCCACATCTTCCTCCCATCTGAGTACCCAAATTTAAAGATGCAATGTGTGACATACCGTATAGGAGACTTTAAAGGGGGACACAACATGATGTCATCATTTTCATGGTTGTGTTCAACCCTTAAGTTCTAAATTGCACCAGTGTGTGTTCTCCAGATGCCATTTTTGGTAGTGCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCACGGTGCATATGTGTTTGTGTGTCCATTGCCTTGTGTGCCAACCTTTTAGATTAATTTACAGAAGCAAAAGGAAAAGGTGGACTATATTATCTTCATCATGAGACCTCTTGATTTGAAAGCATGAAATTTAGAGCAACTAACACATATGTTTGTACCCCGCCTAG
Seq C2 exon
ATCACCATGTTCTCGGTGGTTGCAATGTTGCTGGATTTCAATGTGGATGCTATACTGTACTGCATCATCTTTTTACTACCGCCGTCCACTCTGATTGGATGTCTGATCTTATCTATGCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004040:ENSRNOT00000005489:26
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(18.0=100)
A:
NA
C2:
PF126982=ABC2_membrane_3=FE(19.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]