RnoINT0010345 @ rn6
Intron Retention
Gene
ENSRNOG00000046890 | Abca6
Description
ATP binding cassette subfamily A member 6 [Source:RGD Symbol;Acc:1308998]
Coordinates
chr10:98534388-98538297:-
Coord C1 exon
chr10:98538071-98538297
Coord A exon
chr10:98534530-98538070
Coord C2 exon
chr10:98534388-98534529
Length
3541 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
TGCCTTTTGTCTTTGTTTAGGCT
3' ss Score
9.83
Exon sequences
Seq C1 exon
GTCACAACAAAGCACCCTGTGATGGAGGAGTTAATGTCCGTCAACGCGTTCAATATGAAGACCTTACCTTTTATTTCTAAAGACATTTTTCAATATGAAATTTTTATCTTGTTCTGCTTGCTCTATTTCTCCTCGTTCATCTATTTTGCGTCACGCAGCGTTACTAAAGAGAGAAAGCACTCTAAGGAGTTCATGAAAGTAATGGGTCTACAAGACTCTGCATTCTG
Seq A exon
GTGAGTCCGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGCAGGAGACAGAGAGAGACAGAGAAAGAGAGAGACAGAGACACACACAGAGAGACAGAGGGAGACAGAGACAGAGAGACAGACAGAGAGACAGAGGGAGACAGAGACAGAGAGGCAGACAGAGAGACAGAGGGAGACAAAGAGGCAGACAGAGAGAGACAGAGAAAGAGAGAGGGAGAGAGAGAAAGAGAGAGGGAGAGAGAGAGAGGAGGGAGACGGAGGTGAGACCGAGGGAGAGGGAGTGAGACGAGAAAGAGAGGAGACACACAGAGATGAGACAGAGGGAGACAAAGACAGCAGAGAGACAGACAGAAAGAAAAGACGAGCGCGGGGGGGGGGAGACTGGATTCACAGAAGCAAGCGAGAAGTGTATTGTTACATGCCACGGATCGTGAATGTTGACGCGGGGGTGCTAGCTTGTGCGCTCCTCTGAGTATCGTAGGATGTTAGGCGTTGTTAAATCTTCCATGGAAGATAGGTGGGGCTCACCCAGTATGATTCTGGTGTTGGCTTTTTCCTTTGCAACCCCGAGGCTCGAGGCTCTGTCACCAAGGCTGGAGATGAGGAAAGTAAGGCAGTTAGTTGCCCAGTGTCGGGCCTCAGTGCTGAAGAGAGACTGGATGGCATTTCTGCCTGATCTAGTTGTCAGCTGCCTTCTCCACACTTCCTCGTGTGAGGAAAGCAGCCTTGTAAAGTGGATATGGTATTCATGGATGTGGCCCACCAGGGGTGTTTTGAAGCATGTAAATGCTGTGTGTTAAATGATGCAATAACATTAGGACATAGCATCTAGCCTGGTGGGTAGGGAGGACTTAACAGGACTTGAATTATACACTAATATTTGTACCTTGCCTTACCCCACAAACACTTCAAAGTAATTTTGAGATACATGTATACGTTTGTGTGTGTACACGGACACATCGAATCTATGTGTTTGTGACATAATAAAGGTGAGTACTTTTCATAGAAATAAAGGCTTATGAAGATAGTGAGAGTTTAGGTGACAGAAATGAAAACGATGTAACGTCTAGTCTCCTCAAAGGCAAGCCACAGAATTTGGTATCAGTGGCAAAATGTATGCTGCCAGGCATAAAGGAAAACCACATGTGTATTTTAGCTCAGAAGAGACACGCCATGGTTTTCTATTGATTCTTAAGGGATAACTCTCGGTATATTACTCAGATCAAGAAAGCATTCGGTTGGGCAGACAGTGCAGGGTGTGTAATCTTAGCCTTGGGTAGGTGGACAGAGGAAGATGGGGAGCTTCTGAGCTGTCTGAGACGTATGGAGACCCTGAGACCCTTCATAAATCAAAGCCAATGTATACACAAACAAACACCACTTAAAATATATGTGAACCAAAACCTCTTCCCCAAACACCCAAACTATGTGTATGAAATGGTAAAACTTCATGGACAGGATGAATCACTGTTTATTGACCAATTTAGCCACTCCTATAGTCCCTGGAGTAAAATTTTGGTCCAGAAGCCAAAGATAATCTTAATTTTAATGTAGGTGGATTGGGAGATAGAAAAGAAGGAGTTTTTAAAAAGTGAGAATTTTTTTGTGCGTGTGTTGGAGCATTGGGAATGGCAATTCCCTGCCGTTCAGGAGGGAGGAGAGACAACAACTTCCATAGAAGGGTCTCCTTTCAGTTCAAGGCAAGACATAGCGGGGAGATGCCCAGAGATGCCCACCTTAAATTAGGGAGGCACCAGCAGGCTGGCGTGAAATCCAAGGAGATACTGGAATTCCGATGCTGATTTTATTTTCCCGATGATTCTTAGCATGCATATAAATTAAGACCTGGAAAAATTATATATATTATATAATATATATATATATATATATATATATATATATACATCCTTAGCACTAGGACAGAAAATACTTTGGAAGCATCTTTCCCAAGTGTCAGACATCTTTCGGAAATGAATATGACTTCTATTAACGCCATGATACAGCACGTGCACTTTTTCCAAGAGGGAAGATTTTGTATAAGTTTATTAATATCGTCTCCCCTAATCTACCCCTATAGCTAGTTCCCTTCTCAAGTAATTAGTTTAATGCCTTTATTTCATAATTCTCCTACACTCTGTTGTCTTCAATTTGACCTTAAAGCAGCGTCTTCTGTACTTTGGAAGAAAGTTTACAGACTATGTTACACCTTTCAAGAATGCCGATGTGTCTAGCACAGCCCAATTCATTATGTTGATATAAGATTAAAAACCAAAAGTAGTAAGTAAATCCAGCTAAGCATGTTTTACTGGGGTGCAGGCTGCCAAGCATGCATCTTCTGCTGCACTCTGCAGGAGAGGCCCTCTTGTTAGTTAATTATGCGGTTTTAAGGAGGAGCAAGAACTCTGGACAGAATGGACACCTGCGGTTACATTTGCATCTTGCTAAGGGTTTATTTTGTGACATTCCGTGTGCCCATTAGCTAGCAAGAGGGACTTTATGATGGGACTCGTGCACCCTTAGAGTCCCGTCTCATCTAACTCATGTTGTTATTTAGTGTCTTGGAAAAAATAATGTGAACACCAACACATCTAAAGCAAAATAACAGAAGAGTGTAAAGATTCAAAGGTGCTCCATGCCTTATAACCACGTGGGTGAGGAAACGACGGGGTTAGGAGACCTGGGACAGCACCCGTGGAGGTTTTCCATTTCCTGGGAAGAAGAGAGTGGTGGCGTTGCCTGCAGAGGTCCCCAAGCTTTCCATGCCTCTAGAGGCCTTTGATTGACATCTGACTGGCCATCAGTTAGTTCTTAAGTCTCCTTCCAGCCCAGTTTCACTTCAGGGTCGTGTGGTAATATCTAAAAAAACTGATGGCATCCACTTTAATTCAGTCGTTTCCCTTCAACGAGATATTCTCCCACATCTCACATTAAAAACAGATCTAATAAAATTTCGTTGTGTATTTATCACGGGAAGGAAAATAGGGAGCAACTGTCTAGTTTCAGAAGAACACTAGAATACGTTAATATAACGAAATCCCCTAAGCCCGTTTATAACAGATAATGCTGATGGAAAAAGGCAAGTTACCTATCATACCTACAGCATGCAACATACGGTTTATACAATGCTCACACTATCTGTGCAATACATGCATGTGGATGCCTGGCCCTCAGGCACCAGCAAGGCCATCCTTTGGTTCATAGTCTCTTAACCGGTTGTGACACTCATCGGTTGGTGCCAACGCTAATATTTGGTACCTGCCATTACTGCGTGGTGATGGCTGTCAGAATGCCTTGGAATCCTAAGCAGGACGTTTGGTGGGGGGAATGGGGAGGGGAGGAGGAGGAAGATGGAGAATTGTGCTGCTGGAGAGCACACACAGTGTACTTGTGCAATGATATCAATACCATAGTTAATAAACCACATACCAGAGTAATAGGATTGGACAATGCTTTGGCAGATTTGAAGATTTTTTTTTGAAAGGCTAACTAACTCAGATGCCTTTTGTCTTTGTTTAG
Seq C2 exon
GCTGTCCTGGGGCTTAATCTATGTTGGCTTCATCTTTATTTTTTCTGTATTCATCGCCGTTATCATAACATCTACCCGGATCATAGTGATGACTGGTTTCCTCGTCATATTTACACTGTTCTTCTTGTATGGACTATCCGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000046890:ENSRNOT00000073149:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(19.3=100)
A:
NA
C2:
PF126982=ABC2_membrane_3=FE(12.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]