GgaINT0127523 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BSC3]
Coordinates
chr18:8223681-8224156:-
Coord C1 exon
chr18:8223930-8224156
Coord A exon
chr18:8223820-8223929
Coord C2 exon
chr18:8223681-8223819
Length
110 bp
Sequences
Splice sites
5' ss Seq
CTGGTCAGT
5' ss Score
6.6
3' ss Seq
TTCTTGTGGCTTGTTGGCAGGTT
3' ss Score
6.34
Exon sequences
Seq C1 exon
ATGAAAATGAACCATTCTGTCTGGGAAGAGATGAAATCAATTAGTGGCATCCGTCTGCAATCACCCTTGATCAAATCCATACGTAAAGTGGGCTATATTTGGTTCACCATTTACAGCATGCTGTGTTTCTCCCCGTATATGTATTTTCTATCAGTGAAAGTTATCAGAGAGAAAAAGAAGCTCAAGGTGTTAATGAAAGCAATGGGTTTACAAGACATCGCCTTCTG
Seq A exon
GTCAGTGGGCACTATGGGTTGGGGTTGGGCTTGGAGACCTTAGAGTTCTTTTCCAACCTTAGAAACTCTATGCTTCAATGAAAAGGGAACTTCTTGTGGCTTGTTGGCAG
Seq C2 exon
GTTGTCCTGGAGCCTGCTGTACACCATTTACATCTCAATAACATCAAGTCTGCTGACAGCAATCACGATTAGAAGTGTCACCCACAACTGCAGCTTTTCAGAAATATATTTCCTTTATTTTTTCTATGGTATTGCATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000021395:ENSGALT00000034529:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGTGGCATCCGTCTGCAATC
R:
GCTGTCAGCAGACTTGATGTT
Band lengths:
246-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]