RnoINT0010507 @ rn6
Intron Retention
Gene
ENSRNOG00000059326 | Abca9
Description
ATP binding cassette subfamily A member 9 [Source:RGD Symbol;Acc:1305931]
Coordinates
chr10:98461357-98464730:-
Coord C1 exon
chr10:98464504-98464730
Coord A exon
chr10:98461499-98464503
Coord C2 exon
chr10:98461357-98461498
Length
3005 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAAT
5' ss Score
6.06
3' ss Seq
ATCCTGTGTTTCTCCACCAGGCT
3' ss Score
9.19
Exon sequences
Seq C1 exon
GTGACAACAAACCACTCGGTGATGGAAGAGCTGATGTCAGTGATTGGTTCGGTTATGAAGATGCAGCCTTTTATTGCCCAAGGAGGAGTCGCCACTGACTTCTTTATTTTCTTCTGTGTTATTTCCTTTTCTTCATTCATATACTATTTATCAGTCAACGTTACCCAGGAAAGGCAATCCATTACAACATTAATGGCGATGATGGGTCTTCGAGAGTCTGCTTTCTG
Seq A exon
GTAAATCACGCCAATCGGCATTTGTGAACAGAATGACTTAACTGTGGGGACTTGGTAGGCTCGCTGACACCATGCTTAGGCTTGAGGCTTTAGTGTATCCCAGCATTTGGATGTTTGGAGTGCATGGCTTCACACGCTTGGTAACTGAAGTTTTCTGTATTTCTTGGACTTAAAGTCTAAGGTGCTTCCCATCTTCAGGGCACTAACAACACGGAGGGTGACTCTTAGTTAACAGTTATTGTGTCTATAGGGACCAAAATATTTGAAAAGTTAAGCGTTTTTTTAGTGTAAAATAAAATATGTGTTTTAGACACTTCACTTAAAAGTGAAGATAACTTGGTCCTGCTTTACATGAGTCACTGAAGAGAAAGCTGTTGTGTCCTGAGCATTGAGCTTTCCTCATTAGAAGCAAGAAAGCAGAGTGGTTAGAGCCGTCGCCTGCCCAGTGGGAAAGCCAGGGGCTGTCTTCATCTCAGACTTAGTAGCTACTACCTTGGGTGTGTTATTTAAACTCTGTAGACTTCGGTTTTCTTTTCTGTGAAGCATGGATCAAAGTTCCACTTCTTGTTGGCAGCAGGATTCAACAAGAACATTTATTTAGAGGGCCTTACACTGAAGCTGGGAAAAATTTAAATGCTCAGTATCAGATGTCAGTGGATGGATGTGTGGGAAGCCATGCATTGTAAAAGCATGCTGGATGCAAGTTAGAAAGCCGAGTATTCGATAGTTAGGGGTCCAGCTTTAAGATGGGACTAGCCAAGTGATCTATTAGAGACAGGTGGGGACGTAGAAACGAGTAGAGTCAGAAAGCAAGGCTATGAGTGTCAAGCTTGCCTTTGCTGAACTAGGTGTCATTTTCAGTGTTAAAGGTGGTACCCAGAGGATGCATAGTTCCAGGAACATGGTGGTCTCTAAAGAGGAACTTTGTTGAATAAGAAGACATATTTCACCGTCTGACATCTGCCAAACTCGTTATTTTTCCTAAAATAATGTTTAATATACTAAGTGTGGAAAGAAAGCAGATAGGGGCTGGAGAGATGAATCAGCCATTGAGAGCTCATGCTGCCCTTGAGGACCCTTTGGTTTCCAGCCTCCAAGTCTGACAGCTTACAACTGCCTGTAACTCCTGGTCCAGGGGAGCCAGTGCTTCTGGCCTCCACAGCCACACACACATATGCACACACTCTCCCTCACACCATCCCACAGAGACGCATGGGTGCACAATTTAAAATAAAACATATCTGTTACGAAAGAAAGGACTTGGAAAGTTTGATGCAATGCAAGGGTTTTTTTTCTTCTTTTCTTTCGTCCATTTATGCATTAAAATGATGTCTTCAATATTGAAGGGTATTTGCTCACTGTATCTTAAAAGATGTCGAAAAACTATGACAAGTTCATGGACAGTATTCTATTTGTAAAAAAAAAAAAAAAGAGTCTAGTGAGGAGGGATTGAAAAATGTTAGAGTTTTTGCCCCCCCCCCACACCTAGAGGAAAGGACCTGATATTTTATTTGAATGAAATTAAGTTATTTATAGAAAGCAGATGAAGGAACTATTCAGGTAACTCAGTGTACAGTGAAAGGGAATTATAAAATTGGGCAGAGAAAGAAGACTTCCTGAACTTGATGGTTTTATTTTATTTTATTTTATTTTTTTTACTGTAAATAAAGGAAACTATCTGCCCATTGTGGATATGTCACTAATTGAATTCTTTAATCTTTTTCCCAGAGAGGAAATTGAAATTTAAAGAAATCAAATAACTGCTTCTTAACATATTTAGTTATAATGTCACAGAGGAAATCTGAACTCAAGCCCATGACGTGACTGGACCCTGTGCAAAGCCTCCTTCCTGTCTTTGGCATTAGTAGTAATTGCTCTTCTTCTAGCCACCTGTGTGTTTGTGTCCTCACTGTATTCCTGTGTTGAATCATCTGGTTCAGAAGCCGCCAAACCACTCTTCTGCAGTTTGTGAAGAAGGCGCAGCCACTGAACTTTCAGTGCTGGGGAGAAAGTAAAAATAGCATAACGGTGTAGGAGACATAAACATCTATGCAAAACTCCAACCTCATTGTCTACACAGTACATTCTTTTTTTTTTCCAGAGCTGGGGACCGAACCCAGGGCCTTGCGCTTGCTAGGCAAGTGCTCTACCACTGAGCTAAATCCCCAACCCCTACACAATACATTCTTACTGGAATGTAGCCGCATGTCGTGTCTAGAGCCTCTGTGACTGCTCATGCGCAAGCAGCCCTAATGNNTCAACAGAGGAGATTTGGTTTGCAAAACTTAAAGCATGCATGGTGTGAGGGAAGTCACACCGAACTGAAAAAGCAGCACAGGATCGTCTCTTCTTAACAAACTCTCTTTCTCACACCCATCTTACTGTCCAGTTCATGGCTTTCTCAGTTTGCACTTAGCTATTGTTTTAGTTTCATTCTGTTGCTGTGATCGGCACAGAGCTACATGGGTGAGGAAAGGATTTATTTGGTTTAGACTTCCCCAGTCATAGACCTTTATTGAGGGAAGTCATGAGGGCCAGAACTCAAAATAGGAACCCAGAGGCAGGAGTCACGGAGGACTGATGCTTGCTGGCTCCCTCTCTGACTTGTGCTTAGCTAGGACCATCTACCTAAGGATGCTGCCTAGTGTGGGCTGGGCCCTTCTGCATCATTCAATAAGACCATGCCTCACAGACATGCCCAGAGACCAACCTGATCTAGGCAATGCCACAGCTGAAGCATCTCCCTTCAGATGACTCCAGGCTATTAAAATGACAATCAACATTAATTGGGCAGCTATCTACTGTACACATTTACTGGTTTATTACCTACCTTGCTGTATAGAATATAAGCTTTGAAATGAGGATGTTTTCTTGTTTGCTAAGAATTTACCCTTTTAAGAGAAGCTCTTGGTGAATCACACACTTTTAAAATCATTTGCTTAGTAAGAGAACAAATGGAGTGGCCAACTAATGACCTCTGCACTAATCCTGTGTTTCTCCACCAG
Seq C2 exon
GCTTTCCTGGGGTCTGATGTACGCTGGCTTTATCCTTGTTGTGGCTACTTTGATGTCTCTTATTGTGAAATCCACCCAAGTTGTCGTCTTAACTGGTTTCATGGTGGTGTTCCTCCTGTTTCTCCTTTATGGCCTGTCTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000059326:ENSRNOT00000087502:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(19.1=100)
A:
NA
C2:
PF126982=ABC2_membrane_3=FE(12.0=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]