RnoINT0010348 @ rn6
Intron Retention
Gene
ENSRNOG00000046890 | Abca6
Description
ATP binding cassette subfamily A member 6 [Source:RGD Symbol;Acc:1308998]
Coordinates
chr10:98529878-98531593:-
Coord C1 exon
chr10:98531446-98531593
Coord A exon
chr10:98530047-98531445
Coord C2 exon
chr10:98529878-98530046
Length
1399 bp
Sequences
Splice sites
5' ss Seq
CCTGTAAGT
5' ss Score
7.52
3' ss Seq
TTATCGCTCTTGCTAACTAGGTG
3' ss Score
8.45
Exon sequences
Seq C1 exon
ATTATCTTCCTGGAGTACAACTTGAATGGTGTCGTATTTCCTGACCCTTCCGGAGAATCATATGTAATGATAGCAGTATTTTTCATATTGGCTTTTGATGGTCTTCTCTACTTGGTTTTGGCCTTGTATTTTGACAAAATCTTGCCCT
Seq A exon
GTAAGTAACTGGATTTTTCTCCGATTTTTCAGTTATTGATCACATAGGTAAGTTTTTCCTTAGGATTGCTTTAAAATAGCCTTAGAGGTAAAGCTCAATGTCCAATCTCAGTCTGAATTGATTAGTTGGTTATGCTTCACGGAAGAGGATATATGTAAAATTATCCTGATTTTGAAACAACATAATTATTTAAGTCAATGTTGAAATACAGTTTTATATTAACTAAGTTTTATTACTTTTGATGTATCCTTCCAAGCATCTTAAAGAGTGATAGTACAAATTTATATCAAAATAATCCAAAAAGATAAACAAAGAGGCTTGAGAGTAGGAGCAGACTCTTGGGAAGAAGACCAGGCCAATAGGTAAGTGGGCAGCAAGACAAGGTATAAGAGGAGAAGAATTTGGTGACAGTGACTAATACGCAAGGAAGAAGCTGTCAAAAATTAAAAAGCATTTCAGGGGGCTGCTCTTCCAGAGGTCTTGAGTTCAAGTCCCAGCAACCATATGGTGGCTTACAATCATCTGCAATGAGATCTGATGCCCTCTTCTGGTGTGTCTGAAGATAGCAGCAGTGTACTCATATATAAAATAAACATTTTTTTAAAAAAAGCATTTCAGAAGAAAACTTCAAAAATAAGCAATAATTAGTTCCTGGTATGGCGTGTTTATTACTGGGCCACCACGCTGTAGAAACATTTTCTAATGGAGATTTATTAGTCATTATTCTCAACACTTCCCGTCTTATTCATGATCACAAAGACATAGATTGTGCAGTTCATTTTCCTTGTCTTGCCAATAACCAAAAATAAAAATCCACATAAGCCCAAAGTTCCTCCCCACGTACTGGAATCAGAATGTTCATCTCTGTGCATGACTTCATTCATTCTTTTAAGTTTTAATATCCCCCTGCTTTGATAAGCGTACTGTTGTCTTATATATTTCTATGTAGTTATATCCCTATGACCCATTATTTCTGGCTTATAGATAAAGTTTCTTAATAACAAATAATATTTGACTTCTTCTGTATCAGTCAAAAACTTTACAGTATTGTCATTTCCATCTTGAAAAAAAATTTTCTGCATGCGTTATTTTTCATTCACGGCACGTTCTATGAACTTGTAGTAACTGTGTTTCTAAAAAATAACTTGATGTCACCTATCCTCATAGATATCTTTTAGATTACATTTTTCAATTACTCGACCTATATTTTGTCGCAAGTTCTGTTATATTAATTTTTGCCATGGAACTTTAGATTTTCATTATTAATTTTATTCATAGTAATAGGAAACTTGAAGGAAAAACTGTATTGTGTTTGAAGGTTCAGAATATTTCTTCTTCTCTTAACGAGGCTTCATTGTTCACTGTATTGACCTGATACTTTATCGCTCTTGCTAACTAG
Seq C2 exon
GTGGGGCTGATCGCCGGGCCGCTCCACTGTTTTTCTTGAATCCGGTGTCTTGTTTTCGAAAAAGGACCAGTAGAAACAAGGTCACTGAGAGAGACATAGACCCCGAGCTTCCTTCGGATGAGTATTTTGAGCCCGTGGATCCAGAATACCAAGGGAAAGAAGCCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000046890:ENSRNOT00000073149:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.070
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=PD(10.8=84.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTGGAGTACAACTTGAATGGTG
R:
CTGATGGCTTCTTTCCCTTGGT
Band lengths:
310-1709
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]