BtaINT0011173 @ bosTau6
Intron Retention
Gene
ENSBTAG00000006921 | ABCA6
Description
ATP-binding cassette, sub-family A (ABC1), member 6 [Source:HGNC Symbol;Acc:HGNC:36]
Coordinates
chr19:62047372-62049086:+
Coord C1 exon
chr19:62047372-62047519
Coord A exon
chr19:62047520-62048917
Coord C2 exon
chr19:62048918-62049086
Length
1398 bp
Sequences
Splice sites
5' ss Seq
CCTGTAAGT
5' ss Score
7.52
3' ss Seq
TTTTACCACCTCTTAACTAGATG
3' ss Score
5.82
Exon sequences
Seq C1 exon
ATTATCCACCTGGATTATACTATGAATGGTGTCATTTTTCCTGACGCTTCTGGAGACTCATATATAATGATAGCTACTTTTTCCATATTGACTTTCGATGCCCTTTTATACTTGGCATTGGCGTTATACTTTGACAAAATCCTACCCT
Seq A exon
GTAAGTAATTATGGTTTTTTCCTGACCTCTGCTGGTACTGATCACATTGAAGATGTTTTTCTTAAAGTTATATATTTTAAGAAATAAGGAATGACAAGTATTTCCCATAAAAGACTGAATGATTTCTTTTTCTCTGCTTCATAGCTTTAATGGTCTAAAGGAATTGCTACCTAAAAATAATTATTCTTCTGAATGTGATATAGTGATACACATTATGAACATACGATGATGATCATTTAATTATATTTCAATTAAATATATTTAATTATTATAATTATACTTTAATTGTAATTATAATTACATTGTATTAAATTATGTTATAATTATATTTTATATTTTAAATATTATGCTTATATTTTAAATAATGTTGCATTTTTTAAAGATCACTGAAAGTGTTTTCAAAGAATGATATTGAGGATTTGTATCAGGACAGGTGGAAATAAATTAGTTCTTAAGATGGTTTTGGTTAGCTTAGGGACATTGCATAGTGAAAGTGCCTCCTAACCTTTGTCATATATCGCTCGTATTTACAGAAGTGATCCCCTGGAGGAGGGCATGGCACCCCACTCCAGTATGCTTGCCTGGAAAATCCCATGGATGGAGGAACCTGGCAGGCTACAGTCCATGGGATCACAAAAAGTCAGACACAACTGAGTTACTTCACTTTATTACCCCGTTAGATTTTCTTTATCTTGAAAACAACTTAAAATTTCACATAAGTCTAGAATTCCTACGCACATACCAGAATCAGGGTGCTTTTTTCCCTTGCATGATCCTATTTATATATGTTATTTTGTATTTTTCTTCCACTTTGACTGGATTTAAATTTGTTCTATATATTCCTGTGTATTTATTTGTATGTATGTCTGTCTCTTTATCACTTCTGGTTAACATCTGAAGACCCTTAGTAACAAATGCTATTCCATTTTTTTAAATCTAGGGAATGACCATAGGTTCATCCTAAACAGATTAATTTCTCCATGTACTTTTTATTGATGTACCATATAGATTTCAGTATTTTGCTCAATCATACTGTTGAGTCACACGATTTCTTAAGTTCACAAACATTGAAAATTATTTTTATGTGCCATGTTAAGGCTTTTCCCACTCAATATGGGATTTAATCATTATTCTAAACACATTTTAGAAAGCAATTTATTCAAGTCTTTAATTTATACCTTATCAAGGGTTATATTGTTTACCTTTCATAACAATATGTCATTTCTTTTTAATTTTCATTGTTTCCTTCACTCTCAAGACTTCTTCTCGATAATAGGGAGTTAGAAAGCAATATTTGTGATGCTTAAAAGTCCAAGACATTATGCACTGTTCTAAGGAAGGCTTATGTGCTCACTGTTTGCATGGTACTGAACACATGTTTTACCACCTCTTAACTAG
Seq C2 exon
ATGGAAACGAGTCCCATTATTCGCCATTGTTTTTCCTGAACTCGTCACCTTGCTTCCAACACCGGAGGACTGGTAGTCACGTCGCCTGGAAAGACGTGGACCCTGAGCCCGCCGCGGGTGATTACTGTGAGCCCGTAGCCCCAGAATTCCACGGGAGAGAAGCCGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006921:ENSBTAT00000009089:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=PD(10.8=84.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCACCTGGATTATACTATGAATGGT
R:
TCTCTCCCGTGGAATTCTGGG
Band lengths:
304-1702
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development