GgaINT0127457 @ galGal3
Intron Retention
Description
NA
Coordinates
chr18:7957205-7958107:-
Coord C1 exon
chr18:7957975-7958107
Coord A exon
chr18:7957362-7957974
Coord C2 exon
chr18:7957205-7957361
Length
613 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
3' ss Seq
CTCTGATTGTTTCTATTTAGGCA
3' ss Score
8.76
Exon sequences
Seq C1 exon
ATTGTAAAATTAGAAAAATATGGACCGACTGTCGCAGCAGAGTTGTACCCTTTCTTTAACCTATATGGCATGCTGATCCTGGACAGCATTCTGTATTTGCTGCTGGCCATCTACTTTGATAAGGTTTTGCCTG
Seq A exon
GTAAGTAGTAACGTATGTGAAAAACAACAAATTTCAATTACCTTCTATCCTGTTCCCTCGTGGGGGGAAGAGGTGCCGAAAGAGCAATGGGATAGAGCAGAGGAAGCCATTATCTGCATGGAAGAGCAGAAAGGCATTGCAGCATTGTGCAGGTCAGGTTGTGGTGCAGCATCTTAGCAGCAGTACACTGTGCCATGTTAATGTAGGGCTGCCAACTGGGTTTGCTGTCTTGCTCATGAAAAAAAGATGTAGAAAGACCCTGCTTCCCAGCAGACGGCTGCATGCAGCTAAATAACTTGGCCTCCAAAGCAAGCCCCAAAAGGAACCTGACAACTTCCACCATGGCGCTCTGATGATCTACCTCTGCTGCAATGGCCCCAACCACTGGGCTTGAAAGAATGTTCTGATGTTCAGGTATTTTGGTAACGATTGAGGTGATTGCTGCCTACATGCATGTATAGATACGGATGAGTGAGCAGAAATAGTAGAAATAGCCACCCTTTTGCACTGCCACTATCCTGCTGCTGCCCAAGAGCTGGTTGGACGTGGTGTTTACAGAAGCCGAGCTGTAGCAGTGTAGGGGCTGCCTTTCACTCTGATTGTTTCTATTTAG
Seq C2 exon
GCAAATACGGCGTGCCGTACCCCCCGCTGTTCTTTCTGAGGCCGTCGTATTGGCTGCAGTGGGGCAGCAAGCGCAGCACCCAGCCTGACCCCATCCCTGTCCCTGGCTGTGACACCGAGCCCATGCCTGAGGGCTTCGAGGGGAAGGAGGCCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000021391:ENSGALT00000034523:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.208
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=PD(38.9=82.2)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAAAATATGGACCGACTGTCGC
R:
CTGATGGCCTCCTTCCCCTC
Band lengths:
278-891
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]