RnoINT0010510 @ rn6
Intron Retention
Gene
ENSRNOG00000059326 | Abca9
Description
ATP binding cassette subfamily A member 9 [Source:RGD Symbol;Acc:1305931]
Coordinates
chr10:98457003-98458275:-
Coord C1 exon
chr10:98458128-98458275
Coord A exon
chr10:98457172-98458127
Coord C2 exon
chr10:98457003-98457171
Length
956 bp
Sequences
Splice sites
5' ss Seq
TCAGTAAGT
5' ss Score
9.14
3' ss Seq
CTCACTTCCTGTCCCTATAGGTA
3' ss Score
12.35
Exon sequences
Seq C1 exon
CTTATACATTTGGACTATGATGTGAATTCTAATGTAAATTTGAACTCTCCAAACAACTCGTACCTAATCCTGGCCACCCTCTTCATGTTGGTTTTGGATGCTCTTCTCTATTTGGCACTGGCATTGTATTTTGACAAGATTTTACTCA
Seq A exon
GTAAGTAGTAGGATTATTGTAATTTCACACACTTTTATTACCTGTGTTTGCTTAAAGCAACTATGAAAGTGCTTTTCAACCTTCTGATGCTGCCACCCTTTAATACAGTCGCCACCATGCCAGACATACACATGTCTCCAACCACCACAAACTCTCTTGAATTCAATTAAATCGCCACTTGAAAGAACATACGACACAATAACCTCTGATCCCATTGATAAGATATAATTGCCCAGCTAAACATACAAAGCCCTGTCCACATCCATCTCTCAAGAATATTCATAACAACCTGTAAATGTGCAGAGAGGAATTTTAACATCCTTCTCTATGTTCTCTGACTGCTTCTCCTCCTCTCTCTAAAACTTTTCTCCCACCCTTCCTTCCTTCTCATTCAATGACAGGCCTCATTCTATCTTGTACCTGTCTTCACCTGCATAATGACAGTCCCCTCCTACAGTCCCCTCCCTTAATATTTCCCCAAACCCTACCTCTTTCTAGTTTCTTGGCTTCAGTTTTGCTCCTGGTTGAACTCAAGAAACAAAAGATTTGAAGCGAAGATCTTCGTTTAAGAAAGAACAGAGGGCATTTGTCTTTCTGGGTGTGAGTTACCTTGATGGGTAACAATATTTCTAGTTCTGTCTGTTTGCCTGCAAATTTATTTTTTCTTATAGCTGAGTAATATTTTAACTTTATACAGAGCACATTTATCCCTCCCTTTTGGACTTAATACAATGTTTACATCCTTCTCAAAACAAGTACCTCTGAAATGAAGACCTTTTCCTTTAGTTTACAATGCTGTTTTTTCCTTATTTTGGGAATGCCACATTGTGTGGTGCGACCTAAGGTAATAACGTGGGCTTGGATTGAGAGCCACAGATTTGGTACGCTGTGCTAAATGGCATGTCCTCCTTGAAGCGGCGACTGACCTGACACTTTCTCACTTCCTGTCCCTATAG
Seq C2 exon
GTAAGTACGGACATCAGCGTTCTCCGTTGTTTTTCCTGAAGTCATCTTACTGGTTTCAACGCAGAGGAGCTGATCATGTGGTCCTTGAGAATGAAATAGACTCTGCTCCTTCACTCAATGACTCATTGGAACCCGTGTCTCCAGAATTCCAGGGGAAAGAAGCTATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000059326:ENSRNOT00000087502:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.018
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=PD(10.7=84.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTAAATTTGAACTCTCCAAACAAC
R:
CTGATAGCTTCTTTCCCCTGGA
Band lengths:
286-1242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]