BtaINT0011255 @ bosTau6
Intron Retention
Gene
ENSBTAG00000006896 | ABCA9
Description
ATP-binding cassette, sub-family A (ABC1), member 9 [Source:HGNC Symbol;Acc:HGNC:39]
Coordinates
chr19:62113103-62113842:+
Coord C1 exon
chr19:62113103-62113250
Coord A exon
chr19:62113251-62113673
Coord C2 exon
chr19:62113674-62113842
Length
423 bp
Sequences
Splice sites
5' ss Seq
CCAGTAAGT
5' ss Score
9.09
3' ss Seq
TTTACCGCCTGTTCATGTAGCTG
3' ss Score
7.43
Exon sequences
Seq C1 exon
CTTATCCATTTGGACTACGACGTGAATTCTAACATCCATTCAGATTCTCCAAACGACCAGTACCTCATAATAGCTACTATTTTCATGCTGGTTTTTGATGCTCTTCTCTATTTGGTATTGACGTTGTATTTGGACAAAATTTTGCCCA
Seq A exon
GTAAGTAGTAACATGATTGTGATTCAACACAATTTCATTTCTATTTCTTTAAAATAACTGTCTACAACATATTAGATATAAATTATCAAGCATTCCCCCTCCTCCACCAAAGTTTCTAAAATAAGCCGTAGCGGTATTCTGCATTTAATACCGCTTTCTAAGATCTTGATGGACCATAACATTTTAGCTGGTTTCTTGAAGAAAAAGGCCCTTATAGATTAAGGATGATTTGTAGATCAAGGCTAATAGACCCAGGATAACTACACTGTTATGCTTGTCTCAGAACTGGCCAAAGAATGCTAGCTCCTGATGCTGGGTCTGAGGAACCCCTAAGCCCTCCCAGACGGGTTGCACTGTCTGCTGGCCGCTCTAGCGCTCAAGGTGGTGACTGACCCAGTGCTTCTTTACCGCCTGTTCATGTAG
Seq C2 exon
CTGAATATGGACGTCAGCAGCCTCCCTGGTTTTTCCTTAAATCCTCTTCTTGGTTCCAACGCCGAAGGGCTGATCGTGCGGCCCTCGAGAATGACATCGATCCAGATTCTCCATCCGATGACTCTTTTGAACCAGTGTCTGCAGAATTCCACGGGAAAGAAGCCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006896:ENSBTAT00000009067:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.211
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=PD(10.7=84.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCATTTGGACTACGACGTGA
R:
CTGATGGCTTCTTTCCCGTGG
Band lengths:
313-736
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development