RnoINT0010460 @ rn6
Intron Retention
Gene
ENSRNOG00000004147 | Abca8a
Description
ATP-binding cassette, subfamily A (ABC1), member 8a [Source:RGD Symbol;Acc:1307333]
Coordinates
chr10:98325347-98326066:-
Coord C1 exon
chr10:98325906-98326066
Coord A exon
chr10:98325423-98325905
Coord C2 exon
chr10:98325347-98325422
Length
483 bp
Sequences
Splice sites
5' ss Seq
AAGGTACAC
5' ss Score
7.56
3' ss Seq
GTTCCACTGTCTCTCTTCAGGTT
3' ss Score
12.45
Exon sequences
Seq C1 exon
GTGCAGCTGAAAGGGAACAGCACAGGGGACACCCCGGAATTCCTAGGGTACTGTCCTCAGGAAAATGCTCTGTGGCAACACATGACTGTGAGGGAACACCTGGAGATATTTGCCGCCATAAAGGGGATGAGCAAAAGCGATGCTGCCGTGGCCATTGCAAG
Seq A exon
GTACACGGGGGTCTGCGCCTGTTTGCTTCTGCGCCCCGGTGATGGGGAAAAGGCTCATTCACAGTGAAGGTGGAGCAGTTCCTATTGCTTGACTAGGTGGGGTAGAGGAAACTTCCAAAGTTTTATTCACTCTCATTTTAAGGACGGAGGGGAAATGGTTAGATTCCCACAGTCAGTGACTGAGCAAACTTTAAATATAAACTAAATTGCAGACGTATTTGAACGCTGTGCTAGCAATTTAAACTTTCTTTTTTTTTTTTTTTCCGGAGTTGGGGACCGAACCCAGGGTCAAATGCTCTCTTTGTCCCTGGAATTACAACCTTTGTCTGCCTGACCCTGTTGAATGTTTCCACGAATTTCTTGAACTACTTTCCTAGGCCCCACTCCGCCATCTTGGCCAGGCTCACTGCCCCGCCCTCCCGTTATCTCTCTTCACCATGGAGTGGGTGGAGTGGACCGTGATGTTCCACTGTCTCTCTTCAG
Seq C2 exon
GTTGGCAGATGCACTCAAGCTGCAGGACCAGCTGAAGTCTCCGGTGAAGACGCTGTCAGAGGGAGTGAAGAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004147:ENSRNOT00000005665:32
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.111 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=FE(37.6=100)
A:
NA
C2:
PF0000522=ABC_tran=FE(17.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCAGCTGAAAGGGAACAG
R:
TCTTCACTCCCTCTGACAGCG
Band lengths:
232-715
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]