RnoINT0020272 @ rn6
Intron Retention
Gene
ENSRNOG00000013220 | Arhgap45
Description
Rho GTPase activating protein 45 [Source:RGD Symbol;Acc:1308662]
Coordinates
chr7:12736409-12736703:-
Coord C1 exon
chr7:12736566-12736703
Coord A exon
chr7:12736474-12736565
Coord C2 exon
chr7:12736409-12736473
Length
92 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGA
5' ss Score
6.04
3' ss Seq
TGCACCCCATTCTCTGGTAGAGA
3' ss Score
5.26
Exon sequences
Seq C1 exon
GTTGCCTGCCCCCCGAGGAGGTGGACATGCTTCTCCAGCGCTGCGAGGGAGGTGTGGACGCCGCGCTGCAGTATGCAAAAGACATGGCCAGGTACATGAAGGACCTCATCGGCTACCTGGAGAAGAGGACCACCCTGG
Seq A exon
GTGAGAGACGAGAGACACCCACCCAGGGCAGGGTGCGGGGGTCTAGGGAAGGCCGTTTCCGACACCTCACTTTGCACCCCATTCTCTGGTAG
Seq C2 exon
AGATGGAATTCGCCAAAGGGCTGCAGAAGGTCGTCCATAACTGCAGACAGAACGTCACTCATGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013220:ENSRNOT00000060648:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.021 A=NA C2=0.045
Domain overlap (PFAM):
C1:
PF0061118=FCH=PU(39.1=76.6)
A:
NA
C2:
PF0061118=FCH=FE(22.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAGGTGGACATGCTTCTCC
R:
TGTCTGCAGTTATGGACGACC
Band lengths:
172-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]