RnoINT0021507 @ rn6
Intron Retention
Gene
ENSRNOG00000001888 | Arvcf
Description
ARVCF, delta catenin family member [Source:RGD Symbol;Acc:1306655]
Coordinates
chr11:86746086-86754242:-
Coord C1 exon
chr11:86754012-86754242
Coord A exon
chr11:86746245-86754011
Coord C2 exon
chr11:86746086-86746244
Length
7767 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATA
5' ss Score
8.55
3' ss Seq
CACCCTTCTTCTCCCTCTAGGAA
3' ss Score
13.43
Exon sequences
Seq C1 exon
GCTGCTGGCACCCTGGTCATGGAGGACTGCAATGTGCATTCGGCCGCCAGCATTCTGGCCTCGGTGAAAGAACAGGAGGCCCGATTCGAGCGGCTGACACGGGCACTAGAGCAAGAACGGCGCCACGTCGCCCTGCAGCTGGAGCGTGCCCAGCAGCCTGGCATGAGCAGTGGTGGTATGGTGGGCAGTGGGCAGCCCCTGCCAATGGCCTGGCAGCAGCTGGTTCTGCAG
Seq A exon
GTAATAGTCTTGGGGAGGGTAAAGACAGCTAAGTAGGGAAACAGTTGAGGTCTTGGTGGATCAAAGCTAGCATGAAGTGGCTTGTAGGTCTGCTGGGGCCTGGGGGGAAGGAAAGGAAAGTAGATCCCAAGGGGGCCATAAGCCCCATTTGTCTATGCCAGGCACAGTAGGAAGAAAAGAACAGGGCATGCCTGACTTTTAGAATCTCGCTCTCTCCATTGAGTGAGCCCTCAGGACTCAGGTAGCTGGATTGGATTTGTTTGGGGCAGTTCTTTAAGAGTTTTGTTCAAGCAAGCAGGATCCTACTATCTGCCTGCATCTCAGTGACCTAGAAGCATCAGTCTCTCATCTCTCATCGTCCATGGCCCCAGGCGGGAAGCTCTGTTCCACAGGTAGGGCCGGAGGATGCTCAAGTGGGAGTGTCTTGGCCCTTCCCTACACGTCATGATGCAGGGAGGTCCCAGAATGAGGAAATCCAGAGGTTGGGGTCTGCTGTGATTGTCAAGGATTCCTTTATGTCTGAAGCTCGCCAGTTACCAGCAGGAAGAACGGACTCCTCACCACCCAGCATAGATGCTTGCCCTGTGTGTGTCCCCTGAGCTCCTCAGGGAACGGCTGGAGAACCCTCAGTTTCCCATGCTCGGCCCCTGCATTCTTTCTTTTTTTTTTTTTTTTTTCCAGGGCTGGGATCGAACCCAGGACCTTGCGCTTCCTAGGCAAGCGCTCTACCACTGAGCCAAATCCCCAACCCCAAGATTGCAGGGAGCAGGGGCAGGTTCGGGGTGCCAGCCTCTGCTCAGCTCTTTTTTTTTTTTTTTTTTTTTGGTTCTTTTTCCGGAGCTAGGGACCGAACCCAGGGCCTTGCGCTTCCTAGGCAAGCGCTCTACCACTGAGCTAAATCCCCAACCCCAGCCCCTGCATTCTTAAACTTGGCAGCAGCCCTTTCATGCTAGCACCTGCAGTCTCTGCCCTCTTCTGGACCTGCATCCTAGGGAACTGTGCCTAACATGTACTGGTAGAGACTGTAGAAACCCTGACCTGTTTTAGCCAGAGAGGGAGGGAGGAGCTGGGCATGTGAGATTCTTGGACCAGCTGCCTATGCGAGGCTCAGGGGGACAGGTCGGGACTGCCCCCGGCTGTCCTTGTCTGATGGCTCACAGGTAAGGGTCCCTCTGTCTACTCAATCTACTCACCAAAAACGTATTCAGCGCCGAAGATCACATTTCCAGGAGACCCCAGGCCCAGTAGGGAGTCAGGTTTTCTCCTTCCCTCCTCTTCTTCACCCTCCTTCTCTTCGACACCACCCTCCTTTACTCCGCTTGAGACAAGGTTTTACTGTGTGGCCCTGGCTGGCCTCAAGCTCACAGGAGATCTATCTGGCTCTGCTTCCTAACTGCTGGGACTAAAGGCATGCCCCACGACATCCAGCTGAAGAGCCTATTTTCCAACTATGTTTTCAACCGAGTGTTTTCTGAGGCAGGAGAGTGAATTAGGACTGAGGGGAGTGGGCCTGGCAGAGTGGGCCACATCCATGAGGGGCTTGCTGACTCAAACCCTAGGTCTTCCATGTAAGCTCTGGGGATTGCAGCTCTAATAGCCTGTGTCTAGCACACAGGAGGCCCTGGCACGTAAAACCAAACCCAACCACAGGGTGAGGTCTGTCCTGCTGACCTTCCCTAATCTTTTACAGGAAGTAGATCAGCTCGGCTGGGTCACAGGGAATCAGTGGTGGTCACTGCCCCTTAGGCTGTTGTTCAGGCAGCAGAATACTCAGTGCAGTCCTCCCAAGGATAGAGCAGGCTCTGTTCTCCATCTCATTGACAAGCAGTACGGGAAGGCAGAGGGCGCCCTCAGGGTCCCTGCCCTGGTGGGAAGATGTTCCCATAGCCTGGAGCTGCTGACCTCAGTGTCTTCTCCTTACCCACTCTTGGCTTTCTTGGTTCTAGCCAGATCTGGTAGGCTAATGGGCACACGAGGAGGCTCAGGCTGGTCAAGCCATTGCCTCAGTGCTGAGTCTTTGTGTATTAATCCCAACAAGGGTGTCTTGGAGCCTTCCTCTGAGGCACAGGGTCAGCACAGGCAGTCGAGCATTTGGGGTGGTTGCAGGGCAGGGAGCTGCAGCTTGCAGCCTGGGAGCTACGGTCCAAGGTTCCTGTTCCAGTCCTGGTGCCTGCCTTTCATGTTCTGGCAGGATGAAGACACTTGCCTTAGATGGGGGAAACACACTACTACGACCTGGTCGTCAGGTTACTGGACTTCCCTCCAGCTTAGCCAAGTGGCTGGGGTGCTAACAGTTGGAAAATCTGGTCCGCTTTCCCTCAAAACAGTGTGTTCTGTTAATTGACCAGGGTGGCCATGAAGGGAGGATGAAGGAGGTCAGAAGTCAGAGAGTTCTGGTCTGAGTAAGGAAACTGAGGCCAGTGGGCACTTAGCATGCATGAGTATGCTTGAACACGCTAGCTGTACAGCCTCTGCGAGTGGCACATCGTGGGGGCAAGGTGGGGCCTCAGGGCAGGCTTGACTTTTCAGATTGGGATGAGGAGAAACCCACAGGAGGCAGGAAACCAAGCCTGGGCCCCTTCCTTGGAGGACCCACTGAGCTTCCCTGGGCTGGCCTCAGTTCTACTCTCTCAAAACCTATTTTCATATATATGATACAGGAGTCATTAGCATGCCCTATAGTGTGGAAGGAGGGGGGAAAAAAAAGGCCATACTCTCTGCTTCCCCTCCCTGTACTTGTTTTCTCCAGCAGTCAAACTCCCCAGGTGTGGCTGTTGGAAGGCGTAGGGTGCATCGAGATACATCTTGCTGGCTCAGATCCCACAGCCCATCTGTCTTTTCCCAATAGACTCAAGGCATGGAGAACAGGGTATAAGCCAGTTCTGTTTCCAGGGCTTTGGACAAGAGCCCCATTCCAGAGGGAGCAACTCCAGACTTGGCTTTTTGGCTTGTTTGATACACGGTAATGGCCTTCAAAAGGCGAAACAATACTGACTTGTGTCCTGATGGGGAACCCAAGACATAAGCTGGGGGCCCTGTGGGGTTATGCACTAAAGTCCCTACTTAAGCTCTGCGGTGACCTTCACTTGGAGACCCATGTTGAGTGAGGCCCTTGCAGCTTGACCATACCAGAACTATGTCTTAAAAGCAAAATGACTCACAGGATAAGTAGCTTGGGTCAGGTCTACTCTGTGGGACCTCAATTTACACAACTGTAGAGGTGGATAGGCATATACACATTCACTGGAGGTAGATTGAGACCTGAGAAGGAACAATTGCCCAAGTCTCTTGGTGTGTGTGGGTTGGGGATGGGGTTGCCAACCCTAGGGCAGGATGCTAGGAGCCAAGACCTGGGGCTGGCAGCCTGTCAGGCCTAGCTGCAGAGTCCCGCCCCAGCCTGTGGGGGGCGGAGCCTTGCCCGCCCCGCCTGGGCGCGCCCCTCCCGATTGGCTGCTGGTCTTGGTCGCTGCCAGGTCCGCCTGCACGGGAGGGAGTCAGTAGAGCTGGAGCGGCCGAAGCGCCCGCGGAGTGCGGTCCAGCTGCCGCCCCCGCCGGCTTGCAGCTTCCCAGCTTCGGTCCAATGCCGGCCGAACTCAGACAGGTTGGAAAGAACTCGGTCCCGCGGGGGTCGGGGGCGGTGTCCTGAGGCCCTGGCCTACCCGGGAAGACCCGCTTTTGTTTCGGCGAGCAGCCAGCCCTCCGCAGCTATTGTCTGCTCTGGAGCCGGCTGCTCTGACCCCCAGGGCAGGAGCGGTGGAGGTGGCGGGAGTGAGCCAGCTGCCCTGCGCGGAGGGGGCGTGTGCGAGCCCCATGTGCCTCGGTACCTTAGGGGCTAGAACCCCCGCATGGGGGCTCAAGCCGGGCGACCCTGCACTGGAATCGAGGGTGACTCGGAAAGGGTGCACCCCTTCGTCTGTGGGACAGGTGGCGGGGGAGGGGGAAAAGGCGGGGCACTGAGCCTTCTTAATGGCCCCTCCCCAAAGAGCGAGGCCCGCCCGTTGAAGGAAACTGGCCTAGGCCTCTTGCTCCCTGGGGGCTCTCTCAGCTCCCCTCCATTCCCCTTCCGCTTGCTTCCGACTACACTCTAGGGACCAGTGGAGCAGCTTCTGGAGATTTAATGGAAACCCTTTCTGCCGCGGCATTGCACGTGAGGGGAGGGCGAGGGAGGAGCAGAGCCCGGTACTGCCCACGTGTGGTGGCAGGAGGGGTTTGCTCGGAGTCCAGGCTGTATGTGGTCCAGTACTGGTGAGCGGCAGGTGTGCTGCTACATGTACTGTGTTCAGAGGGAGTGGGGTTTGATAAGCAGTGAGACTGAAGCTCTGTATGGAGCAGGACTGCCTAAAGGACACCTGGTGGTAGGAGGGAGGTCGTGGATTTGTCAATGTGATGAATTCAGGCTTAAGGGAAGCTGGGAGTGGTGACACTTGCTCCCCTCCCCAGTGTGTTCAGCCCACAACACGACCCTTGGCCTTTTAGCCACTGTCAGGGGCCACACCCTGGCAGGCTTACTGCTCCTGTGGGCTGTGGAAGGGTCGTGCAGAGACTGGGCATAAAGGAGGTGGTATTTTGTGGTGACCCAGGGCCTGCCTGGTGGGAGATATCAGCCTGACTTGTCCTACACTGCCCAGGAGGGCCATGCTGGAGTTCAGAACTCTATCCATCTGGTAGTAGCCACTCTGTGCCCTCTGGGGACCTGGCCCCCGGAGGTGTGGGCTCCAAGTATGCACCTGACTTCACTGTATGGTTGATGTATACCAGCAGGAACTGCGTAGGGTGGGGCATGAAGACCTGTGGTCTGTTCTGCATGACACAGACTATAGATGCTTGTCTATAAAGTGCATGAGCTGCTCTATCCTGGCACATCTTGGCTTTCTCTCCATAGTCCTTGCATTGGGAATGCGGGTGGGATGGGTTCCCTTTCCAGCACGAGGGAACTGAGTCCCCACAGGTTTGTGTTCAGTTCAGCACTATGTTTGTGGGGCTCCTCAGGGAGAGGGTACCTGGGTAGGTCAAACCCCAGACCTGCGCAGCAACCCCTCCCGTTAGGCCTGATAGCTCTGAAGTGTGGAGGATGAATTTGGCCTCTTTTAGAGGAGAAAGGATTAGGCTGGAGCCAAGGAGGGAGCGACAGTGCATAGTTGGCACACAGTGTGTTGCACAGGACTCTGACAATATATTAAAGGTGCCCATGTCTGGTACAGAGAGGAGCAACCCAGAATCCGCTGTCAGGCTGTGCTACAAGTAAGGGGACTAGATAGGCTGGTAGGTGGGTTGTGAAACATGGAGACGCTCCACAAGCCGACACTCACTGTTTGTATGGGTGGCTGGTTGTTAGCCCACTGTTTTACAGACCCACTGCAAAAAAATTCCAGAAGCTGGGTTCTGGGCTGGCCTTGTGCTTCTTGCCACCGAAGGTCTCAGTTTTCCCATCTGTATAGGCACTCAGGACCCAGTAGTGGAGAGATAACTGGAGTCAGTGGCTACTTCCCGTGTGTTGAAAGCACACATAAGGACTAGAGCCAATAAAAGTCCTGAAAGGTAATGGGAGCTAGGGTGTGTTAGAGAACAGGGGACATAATGCACTTGGGGTACTGTCAGATCTCATAAATCAGTGTACTTGTGCCTATGTTCCTGACTGGGAGCTCATGTATATGCATGTGCCCATCTGAGGGGTTAGAGACATGAGTCTAGAGCCCTTTCAGTGTGTATGCCCAGGCATGTGTAGCTGGCCTGACTTCCCCAGGAGCATGGCTGACTTACACTCCTGCCTTCCCGGGGTGAGGTCATTGACTGTTTTTAGCTTCCTGAGGTCATCTGCTAGCAGAGACTCTGAGAAGCTCAGGATCTCTCAGCCCATACATTAGTGGGTGACTACCATAGGTGGCCACCCTTTGCTGGAGATCCTGACTCTCCGGATTACCTACCGCAGTTGCCCTGTGTCTCATGTTCTGCACAGCCCAGGGTCTGTGATTCACAACGTCCTAGATCCTGCTTTGCTTTACCACCTATGGAGGGAGTAGGGCAGGGCTCGCCTCTGAATGTTTAATGTATGTAGATGTATGCAAATCTACAAAGGGGCCCTGTCCCCTGGCAGAATGTCCTAAGCAACTTGTCCTCTCGGCCTTGCTCCTCCCCCTCCTTCTTAGCTAGGAATGCCGCTCCTATTTCCCCTCCCCACCCCCAAGAAACCCCTGTTGAGCTTCACAGAGTCCAGCCGTGAGAGCTGCAGCCTGACACTCAGGCACCAAATAGAGAGGGAGCAGCAGCGCAGGCCTCTGCTCAGTACAGTCCATGTCCTTGGAGAAGTGCCCAGGTCACCCAGTCTGGCATCTTTCCAGGTGTCCCCACATTGGGCCCCATCTATTTCCCTTTCCCAGGGAACAGGGTCTTCTCTCCCTGGACAGGCCCAGACATTCTTCTCATCTGTAGCCTAGGAAAGGGACCAAGCCCTGCCCGTAGAGGTGTGGCAAAGCTCACTGATTCCCTGTTAGATGCATTCCTGAACTATCCCTGCTAGGAGCTGTGCAGTTCTAGCAAACCTCTTCTCCATCCAGGCCTTAGCTCTGTCACTTATAAAGTCACCTCTCAAGTCTCCAAAGGCCCCGAGAGAGGGAGAGGTGTGCTTTGGGCCTCTGCTGTCCTGTTACCAGGGCTGGGGGGATATCCTACCATGCTATGCTAGTGATATACTTGTACTCATCAACTTGTCTCTGTCAGGGCCAGGTGCTCCCGAGTACAGGAGCTAGCTTACTGTCCCTGTGGTCTCTGCAGGGAGGCCTGTGGTGAGGAGGCTTCCTGCTTATTAGAGTGCCCAGGCCAGGGAAGGGCATTGTGGCTCTGTAGCTGGGGAGATGTAGTATGAACTACTAGGCCTCCCTGGGCCTTGGGCTCGGAGGCACAACCTACTGCCGGCCTAGCCATGGTTACAAAGGAATGTGTCCCCTCCAACCCGCCCACTGTAGCTTGAGTTCCAACCCCTGCTCAGGCCAGATGCCAACCCTGAAATGCTGACAGGGTAAGGGCCTGGGCCCAGGGCAGACTGGCTCTCAGGTCTGTGTGCCACTCTGCATGGCAGGAACTGGCCTGTCTTCTTGGAATTGGCTTCCACACTGGCTAGTCTGACTGATACACAAGCGGGCCTCAGTCCATAACTGTTTTGTCCAGAATTCCCCCACCATGCCTCTCTGCAGGGTGGTAGTAAGGTAGTAAGTAGACATCCATATATCTAGTGTCTGATATGATACACGGTCTCCATGTTCCAAGAGCCTCTGGGCCAGAAGGAGCAAGAATATCTTAGCACCGTTGACCAGTGCCTGTTGACTTTAGAAGGTGGGTATCTCAGACCTGCAAGGACTCCTGGATGATCTTGGTACAGGATTGTATAAACTGCTGAAACTGACTCTAAGACTGGGCCATTTGGTTCACAGAGTAGGGTGGGGAGGACGGTCAACGTGAGGAGGCAAGTGATGTCAGTGAAACATCCCGCAGGACCTTCTTGTTTCCCCCTCGTGCCTAGAAAAGCATGTGGCAGAGCCATTGAAGCTCAGGGAGGCCACCCTGGCTTAGGGCACTGTCTCCATCTCTAGAACCAACAAGCCCACATACCATTTTCTTGTCCACAAGGACAGTCTGCCAGGTGCCTTTGGGTCCAGATGGACTTGCCTTGTACCTCAGTTTGGGGAACTGATAACCCCTGGTCAGCAGGCATACAAGGCAGAGTGAGTTCTGTATGGATCTTGACCTCTGACACCCTTCTTCTCCCTCTAG
Seq C2 exon
GAACAGAGCCCGGGTAGCCAGGCATCGCTGGCCACGATGCCAGAGGCACCTGAGGTGCTGGAGGAGACAGTGACTGTGGAGGAAGACCCTGGCACCCCCACCTCTCATGTATCCATTGTCACATCAGAAGACGGTACAACCCGGCGGACTGAGACTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001888:ENSRNOT00000044635:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.775 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]