RnoINT0026393 @ rn6
Intron Retention
Gene
ENSRNOG00000007681 | Brd3
Description
bromodomain containing 3 [Source:RGD Symbol;Acc:1308925]
Coordinates
chr3:6013891-6017597:-
Coord C1 exon
chr3:6017494-6017597
Coord A exon
chr3:6014199-6017493
Coord C2 exon
chr3:6013891-6014198
Length
3295 bp
Sequences
Splice sites
5' ss Seq
AAGGTCTGT
5' ss Score
6.43
3' ss Seq
TTCTCTGCTTTCTTCTGCAGGTG
3' ss Score
13.74
Exon sequences
Seq C1 exon
GTGAGTTCTGGACCAGCCTGAGCTGTAGAGTGAGACTGTCTTGAGCCAGAATAAGGAAGGAAGGGAGGGCCGCCTCTGACCTGCAGGCTGTGAGCATTGCAAAG
Seq A exon
GTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCAGTGAGATAGAATGGTCTACCTGCTGCATTTCTGGTTGCCGTGACTCCCCTCTGAGACCGGGCCTTTAGGGTTCCACTATAGCTCCTCCTCATATTGATGGGAGTACTCTGGTGTATCTCTGGCTGTGCCTGCAGCAGGCCCTGAGGGTCTGTCTCTGCTGTACTTTCTGGAAGCCTCACTTGTTTGTGAGGCCTTCACCCTGATAAGCATCTTGGGCCCACTGTGGGTCAGAAGGCTGCTCCTCTGCTGGGTGGTGGTCTTTACTCCCACCTTCAATCCCAGCATTTGGTAGGCAGAGGCCTGCAAGTCTGTCTGAATTTGAGGACAGCCAGGGCTACACAGAGAAGCCATGTCTCAGAAAAACATACAGAGAGTGGGGGAGGGGGAAGTGAGGAAGGGCGGGGGAGGGGAAGAGGGCAGAAGGGGGAGAGAGATCTCACTCCAGCAAGCAAGCTGCTTCTCCCAAGGGAGATAGATGGCTTTCAAGGAAGTCCGTGACTCTCCTTTCTGCTCAGGTTCTGGTGTCTGGTTCACGCAGCACTGCTGTCTGGTTGGTTGAGGGTTGCTAGGCATTGATGGGGGAAGGTCAGGCCATGCGTCCAGCGGTCCCTGCTGCCAGGCGTGCTAGAGTGCTTTGCAGGGGAGTCTGTGGACATCTAACTTGGTCCCTAGGGATGGTAGTACGCCAGGGAGCTTAGGTGCTCAGTGGTTGGGATCCTGCCTCTCAGCCCCTGTCTTGGTGGTCCTGGGAACTCGGCAGCTGGGCTCTCCCACCTCCCTAACCCGCACCCTGCTGTCACCCTGCCTGTCTCCATCCCAGGCGTTAGGACATTTTCAGGAGGTGGGTTCCAGGACCTGGGTGTAGAAAGGACTGTGAGCATCTGCCTTCCTCAGAGGAGGCCTTTCTGCAACCTCAGACCCACACAGTAGCAGGACCAGCCTTCACTCTGAGGAATCTCAAACTGTATGAGAACATCAGCTTCCACTCCTTCATTGGTTATGGCCAGCTTGTGCTGCCTGAGCCCTGAGCACTTGACTCCAGGCTGACAGCCCCATGGGAGACACAAGACACACCTTGGGGCTTTCAGTAGCAAGGATGAGTTAGAACGTCTACCCTGCAGCCTCATGCTGTTCAGTTTTCTGTAAGTTCCAAGGAGGCCTTGAGAGCACGGGAGTCTCATGAAGGCCAATGAGGCTGCAGCTGCTACACATTTCAGGGCTCTGTCACCTCGGGCTCTGCTGGGTAGTGTAGAGTTAGGAGGGGTTTGAACCTACAAGTGACCTCCTTTGTGTAGGGTAGGACTGTCCCAGTGAAATGAGCAGAGGGAGAAACTGACGTCCTGGTGGGCGGGCAGCCCAGGCTTATGCCTTGGTAGCCTTTGGTCTACGGGGGAGGGAGGACACAGCTTCGTGGCTGTTGGCACAGGTTAGAGGGGCTGCTTGTCCTCTGGGGCTGTGCATGCCAGGTGTGGAGATACTGGGGCCTGTGGAGTGGCATACTGTGGGTGCCCAGGATACCTGGAGAGCCTCAGTGAACACACGGCTGGCACCCCAGCTGCTCAGAGGCACTTCCTGGATTCTGGGTGGCTTGCTGGAAGTCCAAGTGTCTTGGCTGCTGACTGACAATGTCTGATGTTTGCAGTGGAGGGAGTGGAGCCTGCTGAGAGTAGATGACATTAAATGTTTAGCAACCAGCCTTCTCCAGTAGGGCTTCAGATTGCAGCATTTACAGTCTTTAAGGGTCCCTCAAGTGCTCTGAGAACCCACTGGTCCTAGAGTAGACTAGAATAGACCTCTGGGTGTTCCCTTGAACTGATGCAGGGTAATGAACAGAAGCACACAGGAAAAGTCTAGAAGACACCAGGTTCACAGATGAGGCGCAAGGCCCCACATGCAGTGTGGAGCCTGTGTTAGGCTTTACCAGTGGAAGTGGAAGTGCACACACAGTGCTGCCCAGCTTCCTCCCTGGGAGATAGCTGCTAAGCCCTTGCAACTGTCCTAGGGGACAGATCTGATTGAGGGCATTAAAGGAGTGAAGAAAGGACGGGCAGACACAGAAAAGTAGCTGGAAGTCAGATGGGCTGGGCTCTGAGGAAGAAGCTGTAGCACCCTGGAAAGTCCGTGTGCTGTCTGTTGTCTACAGTTGCATAGGCAGGAGATGTTACTGCATATAGCTCAACGGAGGCACGTTTGTGGTGTGCCGCTGGGTCAAGGGGACAGGTTTGGTTGCTGAAGTGGCTTTAGATCTTAAGTGTCTGGAAGGAGGAAGTTTTCTGCACACATGGACCAGAAGAAGGCTTTGGTATTCTTTTCTGAGTCTCACCCAAGGGAATGGGTAGGGTTTTGCCATTCCCCCACGAGTCTTAGGCTGTGGCTGTACACATTTACTCAGGGTTTCTACCACTTCGCATAGACTACACCTGACAGGGTGTCCTTGCTGTAAAGTCTTACATGCTACCTCTACTTTATAGTACCCTCATTGTAGAGTTTGCTGCGTGGTGCTGGGGGCACCATGCAGTGGAGGTGCCCTGAGAGAGTTCTAGCGGGGATCCTGCGGAGCAGGGACACCTGCATGCTACCAGTATTGCACATTACCCTTGCTGATGCTCCTGGCTTTTCAGGGATTCATGGACAGCTCTGTCTGTGGCCAACATTTCTGACATCTAGGCTAGGGGATTATAAAGTGGCAGGATGTATCGTGTTCAGCGACCAAGCACACAGGTGGCATACAGTAGGGGACCGCAGGTTAGGGTCACCCTCTTTCACCATTCTGATTGGATGAGGGACAGGCATGTCACAGCCAGCCACCATCATAAACCCCAGCTGGTTCTCCTGGTTACGTTAGAACCTCATGCCGTGCCCTGCTCAGGGCCCCCAACTCTTTGTACTCGGTTGAAGTCTGCAAACTTCAGTTGTTGCTCTCTCAGCTACGCTGTTGGATACATGTTGTTCTCTGAGCCTGAACTGTTCAAAACATTGCCACGACCAAGTAGTTGAGGGTCTGGTAGAATTGAGCCAGTCCCAGTCACTTAGGGCCCTGGGAGCTGAAAGTGACTAGGTCCTTCATATCCTCCCCGCCCCTTTTCTGGGAGCTGGTGACTCATGTTTGCATTTTCCCCAGGTAGAAGAGCTGTGGCTAGCGTGGCTCTGAGGAGTGCCACAGCTACACATCAAGGTGGTAGGGAAGGCTGTGTCCTTGCTCCGGTGGAGGCTCCTGGGGTGATAGATAGCTTCTCTGCTTTCTTCTGCAG
Seq C2 exon
GTGCCTGATTGGGCCCAGAAATGGGATGCCAAGCCTTCCCGAGGAGCGCCTCTTTGAGCTGCTGCTGTGACAGCAAGTGACTAAGCTGCCAGAGGATGTCCACTACTACAGCGGCTGCCCCCACGGGGATCCCGGCAGTCCCGGGCCCCGTGAACCCTCCCCCACCTGAGGTCTCCAACCCCAGCAAGCCCGGCCGAAAGACTAACCAGCTGCAGTACATGCAGAACGTAGTGGTGAAGACACTCTGGAAACATCAGTTTGCCTGGCCTTTCTACCAGCCTGTGGATGCAATCAAGCTGAACCTGCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007681:ENSRNOT00000065867:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.493
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0043920=Bromodomain=PU(33.3=40.8)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]