RnoINT0026481 @ rn6
Intron Retention
Gene
ENSRNOG00000002073 | Brdt
Description
bromodomain, testis-specific [Source:MGI Symbol;Acc:MGI:1891374]
Coordinates
chr14:3405995-3410161:-
Coord C1 exon
chr14:3409972-3410161
Coord A exon
chr14:3406100-3409971
Coord C2 exon
chr14:3405995-3406099
Length
3872 bp
Sequences
Splice sites
5' ss Seq
GCAGTGAGT
5' ss Score
7.39
3' ss Seq
GAATCTTCTCTTTCCTACAGATG
3' ss Score
10.88
Exon sequences
Seq C1 exon
GGAGTTTGGAAGCGGATTCACTCCAGAATCTTCATCAAATAAAGTGCAAGGCAGGTCTCACGGAGAAGAGCAGAGTGAACAGCAGCAGCTGCCGTCCCCATCGGAAACTCAAGACATAAGCAAGCTCTGGCTTCTCAAAGACCGGAATTTGGCGAGGGAGAAAGAGCAAGAGCGTAGGAGAAGAGAAGCA
Seq A exon
GTGAGTACATGGTAGCCCACTAAGCCTGAGAAGAGAAAGGACGCTTCACCCTTCATTTCAGAGTGCTTTCCAGGGACAGTGGTGGCACCTCTTTGGTCTGGATAGGTTCTGAAATAAGAGCTTAAAGTACAGGTTTCATAGTCAAAACGAGCAGGCTCACCGTAATGCAGACCACTACGGGACCACTAGGCTGATGTTTACTAGACTATGCCCCTGGCAATTTATTTAATTTTCCTATAACTTAAGTTGCTCATTGTAAAAAGAGAATAGCAATTTCCTGTGACAGAGTAAATTAACAAACATTGAGCACATGAAGGAAGCAACTGGCGTGTAAATGGGGAATCCACCGTTTACTGTTACTGCCCTCAGAAACCTCAGATCACGTCAGGCGGGCATGCCTTCCTGGTCAGTGTTCTCATGGTGACAGCACACAGCATACATCTCACCTCCACAGCAGGGCTCAGGAGATTCAGCCTCAGAGGCTGTCGCTCTCAGGCCCAGTGCAGCTGCACCTGGTGCGTCACGGTCCTACCTGCGTCAAATGTTTCCTCCCATCTAAAAACAACATTCCAGGCAAATCTTGGTGATGCCCCCAAGAGTGTAACTGGAGTTGTTCACGGGAGCAAGTGTGGATGAGGAAGGGGTCATGTATAGGAAGATGGCAGCTTTTTGGCATTTGTACACTGGAGTCATTCTCATCTCCAACAGTTAACCTCTTCTGTATCCCCAGGGAGGGGAAGCGTCTCATTTACCTTTGAGCCTTCTCCCCTTCCATGAGAAAGGAAATGCCCAATCTTGTGAGGTCCGTCCCATGTGTCTGATGCTGCTCCTCTGATTTTAAAAGGTAGCCGCCATGCCCAGAGGAGACAGACTTCAACAGCACAGTCAGCACCAACACATCACTAGAAACCTGAGTTCCTTAATCCATAGTGTGGGGCTAGAGACACGACTCAGTGAGTAAAGCACACACTTGCTGAGCACCGATGAAGCCACAGTCCTGAGCAGTCGTGTTCTGTGCTTAAGTCTTGAAGTGTTCTGTGTGCTCTGCAGGTCTGTTCATTTTCTTCTCGTTCTTGATTTTCTCTTGACTCACTGATCATTTGAAAGTAATGGTTCAGTTTCCATGCATTTGTGTGGTTTCTCTTTAGTACTCACTTTTACTTTTAGTCCATTATGATCTGATTGAACATAAGAGATTTTTCCAGTGGTTTGGTATTTGTTAAAACTTTCTTTGTGGCCTAAAATGTGATCTGGTTTGGAAAAGTCAGTTAAATGATCAGGTACAAAATAGAGCATGCTTTCTATTGCTACTGGACGGAGTGTTCTGTAGATCCCGAGTTCATTTGATCCACTATGATTTCACTCTGAAGTTTCGTTATGAATTTGTCTGAAGGATCTATTGATGGAGTCTTGGAGTTAACACTGTAATTTTGCATACCTCTGTTTCAATGTTTCTTCTTAGCTGTGGCATTGATTGCATGTTAACTTCCTAGAAAACAACAAATGAAATTCTACCTGCTTGCTCTCTCCTTCCTTTCCTCTCAGATAGGACCTTAGCTTTGTAGCCTAAATTCACCCGGAACTCCCCATGCTCCTGCCTCAGCTTCTTGAATACTGGGATAAGAGGCCTTGGCCTCGCGCAGAGAGGTTGTTTTACTGTTTGTAGTGCTTTGGACCAAGCCAGACTTTTACACCTGTTACGAATGCCCTCTAGAGCTGACCCACGTTCTCTGTCCAGAGTTTATTGTAGAACACTGCTTTGCTAGAACTTCTACCATGGTAGACATGTTCTATTGTCTGTTTGCAAATATTTGTGGGATTGGAAGTGAAAGTTTTGGGTTGTGTCATGTGATGGAGACACATGTGGTATCTTGTTGAGGCAGACTTACATGGTGTTTTGCTGAGGCAAGACCCATGGGAGGAAACACGATGAGAGGGTTTAAGCAGGATCAATAGACAGTGATTAGGTGCTTGCAAAGCTAGCCTTATTTACTTGTTTGTCTGGAGTCTTTACTGATCTTTTCTTCACCGAGAGGGACATGGCAAAGAACTAGTGTCCCAGGTGGTTTTGGTTGTCCCCACTGACCCGTGCTGATTAGGTGGAGACCTGGCTGTTTCTGCTGGGTCATGCCACTGCTGTTGATTTGTGTTTGGTATCCTGGTGTTACTAAACTAGACTGTTGGTATTCTAACAAATGAAGATTAAAATCACCTCACAAAACTATTTCTAAACAGGTCCACATCCCCTTGTCCTGTTTACCATCTTTCTTCTCTTCCTTTGGATGGTGGGCTTGAAAGGGGGTGGGGTCCAAATGTTTAAGAACCCTTATTAAAAGTCTGCTTTAAAAAATCTAAGCCTGCAGGGATCCTTTTCTTTTGGAAAGGTAAGTGGGGATTTTTATATTAAATCCTTGAGTCCTCTTGTTGAGATTCTCAAAGGCCTGACTTTAGTCACCCTCTAGTACTCTTTCTAGAGTCTAGTGTCCCTTAATAACCCAGTTTGGCCTGATAGCATTGCCGATATCCTAAACTCTTCAGGACATTTAACAGCACCCCAAAGTCTGCATCATGTCAGTCTTTCTTCATCAGCCCTATAGTCTTCCTACACAGCCAATGAAAATGCCAGCTCACTTCCAAGAAGCCAGCCAACTCATTGACCTATGACTGTTCTGTGCGGAGTGGGTGGAGCCCTTTTAAATTTTCACATTTGCCATTACTTTCAATGGAGAACCTTGGAGACTATGGTTGGAAGCATTGTGCGCTCACTACAGCATCCCCACTGCCCCTCACGTGTCTCTCATTCCCTCATACAAGGCTCATGCTAAAATCTATACTAAAGCCTTCTCTCAGTGAATTCCAGCATTGCATGACAAACAAGCCTAAGAATATGGTGGCCTCGCTTCTGGTGATTGACGTGTGTTTCCTCACCTTGGCTCATTTCTTAAAGAGCATTAATATGGAAATGAGCACTGTCCCTAGTGCTGTCCTGCAGTCTGAGCGTGTTCACGGAGAGCACACTGGGTAGAATTGATTAGTTAGTGCCGGAATCAATGAAAGCCCAAAGCGTGTACATTTACATGTTATAGTTCTCTCACACAGGATTACTTTAAACTTTAAAAATATTTATTTACTTATGTGTGTGCATATGTTTACATGTGTGTACATGTGTGTTTACATGTGTGTACATGTGTGTGCCTCGTGTACATGTATGTATGCATGCCCACAGAGTCCAGATGAGTCAATCTGCCTGGTTAGAGTTATAGGCAATTGTGACCTATCTGAGATGGGTGCTGAGAATTGAACTCAGGTCTTTTGTCTGGGCAGTGCACACCCTTAATCACTGAGCTCATTCCAACCTGGTTAAAGCAATTTACTGTGTTAGTGCCTAGTGCCTCCTAGATTACAGGAACAAGCGAGGTAGCGTACCCTCGTCTGTCTGTCTGTCTGTCTGTCTCTCTCTCATAGGTTTTTTTTTTTTTTTTGGAGGAGGGGTGGTTTTTGTTTTGTTTTGTTTTTGTTTTTCAAGACAGGGCTTCCCTATGTAGCCAGGCTGGCCTTGAACCGGCAGCCCTGCCCCCTCTGCCTTCCCAGAGCGTTTGCCTTTATTGCCAGCTTCAGCCTGCAGCCTCACTAACACTCCCTAAGGGAGGGCTCTTCTTAGTTGCAGGATTGAACTTCATATCCACTTCCTTCAGGCATTTTATCCCATGGATAATATATTTAAAGGAACCACCTATATTTTTAATTAAAATTGTAGATAAGGTCATGAAGTAATTTATATTTTGCATGAAACTTTTTCAAATGTTTAACTATTTGCATAGAACTGTAATAAAGTCACAGATCTTAAACTAAGAATCTTCTCTTTCCTACAG
Seq C2 exon
ATGGCGGGTACCATTGACATGACTCTTCAAAGTGACATTATGACAATGTTTGAAAATAACTTTGATTAAAACTCAGTTTGTAAATTAACTCTCAACTTTAAATGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002073:ENSRNOT00000061538:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.875 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]