GgaINT0037009 @ galGal3
Intron Retention
Gene
ENSGALG00000006031 | BRDT
Description
NA
Coordinates
chr8:14993688-14994602:-
Coord C1 exon
chr8:14994479-14994602
Coord A exon
chr8:14993757-14994478
Coord C2 exon
chr8:14993688-14993756
Length
722 bp
Sequences
Splice sites
5' ss Seq
GCAGTAAGT
5' ss Score
9.07
3' ss Seq
ACTGATTTGCTTTCTTGCAGATG
3' ss Score
11.26
Exon sequences
Seq C1 exon
AGACTGTAAGCCCCGAAAAGAAGAGAATATGAGCAAACAACTGCCAGAAGCTCAACAACACCCTCTTGTTCAGGACCGTAACTTGGCTAGAAAAATGGAACAAGAACGCAGAAGGAGAGAAGCA
Seq A exon
GTAAGTTGTTGACTCTTTTTGGTTGATTTTGTTTCAATTCTAGTACACAACTGAGAAAAGAAAATTCAGGTCCTTCAAAATAAGGACCTGAACAACCAAAAACAATAGAACTCTGCAATTTGAAGTTAGACCAGAAAATAAAATAGGATTATTAAATAAATCTTTAAGTGGCATAACAAAAAAAGGTGCTCATATTACTCATATAATGTTACAATAATTGCATAACAAAATCAAATTATTAAGAACGCAGAGATTCCCCTTTAAAAAGTCAAACCTCAAGTCTTTGCAAGCTGCCTTTCCTCTTCAACATGCTAACACACAACATGCCAACAAAGTGCTAGTCATACTGTACTACTCTGAAATACCAACATGGAGCCTTTTCAAAAATAACTTACTGGTCTTATTGGTATAGATGATGAGCGCTCTTTAATTGCTACTATTTTTTAGGTTAAACGTTTCTAAAACAGTTCAATGTACAGTATTATGCAGTTTGACTAAGACCATAATAGATCCAGATGAGGTCTCCTGAAGCTTTCATCCTGCTCAGCACTTCTCAGAAAGGACTTGAACAATATGCATAGGTAAATGTGTAAAAACAGAGGAAGCGTACACTTCTTCAGGAAGAAGCTTTGTAGGTTTTTATTAAATCTTTCTATTTGTCCCACATAGTATTCATTACTGCCTGATTGCTCTGAGAAATACACTGATTTGCTTTCTTGCAG
Seq C2 exon
ATGGCTTGTACAATTGATATGAATTTGCAGAGTGATATTATGGCAACTTTTGAAGAAAACCTTGAATGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006031:ENSGALT00000009708:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.929 A=NA C2=0.545
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACTGTAAGCCCCGAAAAGA
R:
TTCAAGGTTTTCTTCAAAAGTTGCCA
Band lengths:
190-912
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]