BtaINT0026814 @ bosTau6
Intron Retention
Gene
ENSBTAG00000003724 | BRDT
Description
Bos taurus bromodomain, testis-specific (BRDT), mRNA. [Source:RefSeq mRNA;Acc:NM_001075852]
Coordinates
chr3:51546548-51551294:-
Coord C1 exon
chr3:51551120-51551294
Coord A exon
chr3:51546677-51551119
Coord C2 exon
chr3:51546548-51546676
Length
4443 bp
Sequences
Splice sites
5' ss Seq
GCAGTAAGT
5' ss Score
9.07
3' ss Seq
TTTTCTCTTCTTTTCTACAGATG
3' ss Score
12.13
Exon sequences
Seq C1 exon
GGACCATGGCTTCACTCTAGAATCTTTTCCAAATAAAATGCAAAACAAGTGTCTTGAAGAAGAACAAAAAGAAGATCAGCAGTCACAGGAAGCTCAAGATAAAGACAAACTGTGGCTTCTGAAAGACCGAAATTTAGCACGGGAGAAAGAGCAAGAGCGGAGGAGAAGAGAAGCA
Seq A exon
GTAAGTGAATTTTAGTTTACTGAATCTAACAAAGGAAAGATTTAACAGGGCAGTGTCTTTACATGTTCAAAGATGTATTCTAGGTGGTTCTTCAGTAACAATTACCTCTTTAGTGTGAGGAGTTACTTCTTTAGTGAGGATCAAGTTCATTCTAAAATTAGAAAGTAAAATTAAAATCTCATAGTTAAATGACACAAGCATAGCATAATAATAGAGTATCAATCCTCGAGCCTTTGGGTTTGGGTTTGAACTTTGGGTTCAAATCCTGGTTCTTCCATTAAATAGACCTTAGAGGCTGGGCTATTCATTTAACCTCCTTGTGCCTCAGTTTCCTTATCTGTAAAGGTAAAAGGTGAAATGAATTTACTTGTATTAAGCACATTTGAAAATGCCTGGCACAAAGGTAGAATCACTTACTGTTGTTATTCTTGAAAAACCTATAAACTACCTGTGAATTGTGGCCAAAAGATATGCCATCTTAGTCAGTGTTTAGTTCAACTCTGCATCAAGTTATATGTCAGTTATACCTTGATGAAACCGGAAACCAAAACAAAAAAAAAAAACAAAAACACCATAAAATTTCTATTTAAGGTGTTCTTAATATATAAAAAGTATAGAATTCTTCCTTTTATCTGTGGATTATTTAGAAGTGTGTTATTTAGTTTTCCAAATATTTGGAAATTTTCTAGCTAGTGAAAATAATAGAAAATTAGTGATTTCTAATTGAATTCCATTGTGGTTAGAGAACACATAATATCTTGAATTATTTTAAATTCACTAATAAGACTTGTTTTATAGCCCAGATTATGATCTACCTTGGTAAATATTCTGTATGCACGTAGAGTTCCCACATGTTCCTACCCTTTCCCCTACCAATCACAGTCTCTTCCACCATTAACATCCCACTTTAGTGTGGTACATTTGTTATGCAATCTATGAATTAACATTGCCACACCATTGTCAATCTTGGTTTATCAAGCAAAGTCTATAGTTAGCATCCGGGTTCACTCTGTGTTGTAATTTATGGGTTTTGACAAATGTATAATGACATACATCAACCACTGTGGTACTCTCCTTTTGCTGAAAATTCCCTGTTCTCCTTATGTTCACCCCTCCCTCCTAAACCTTTACAGCCACTGATCTTTTTATTGCCATAGTTTTGCCATTTCCAGAATGTTATATAGTTGGAATCTTTAGTGATTGCAGTTACTTTTGTATTAGACCACTTGAAGTTGTCCCATCTCAGACATTAGTCATAATATCTAGAAGTTTGATTTGGGTATTTTTAATGTTTTTAGTAACTCTGTTAAACTTTTGAACAAATAGAATACAATTATCATAATTGTTTAATGGGTTCTCTGCTAATTCTAATATTTGTCACTTGCATGTTGGTTTCAATTGATTGATTAATCTCCTTTACAGATAATGTTTTTCTCCTTCTTTACTTAACCTGGTAACCATTGATGCCAGATATAAATTTTATCTTGTTGAGTGTTGGATATTTTTGTAATCCTGGAAAGGTCATGTGAACTCACAGGTCATACAGAAGTACTAGTTCCAGAAGAAAAAAGTCATTGCCCTTTGCTGTAGTGTTGACTGGGCTTACTAGATGGCTCAGTGGTAAAGAATCCGCCGGCAAATGCAGGAGACACAGGGTTTGATGCCTGGGTCTAGAAGATCCCCAGGAGAAGGAAATGGCAACCCACTCCAGTATTCTTGCCTGAAAAATTCCATGGAGGAGTCTGGTGGGCTGCAGTCCATGGGGTCACAGAGTCAGACATGACTAAGCAACCGAGCACACAGGTAGTATTGATTATGATACAAATGAATTTCCTAGGAAATAAAACACAAGTTTTATCAGCTTATTTATAATGTGAAGACAGAAACAAACTGTATTGACCAGTGTTGTAACATATGATGGAGTTTACTTTAGAGCAATATGCTCTTATACAACAGCAATCCCCAATCTTTTTGGCACCAGGGACTAGTTTTGCGGAAAACAGTTTTTCCACAGACTGGGTGGGGGTGGGGTGCTTACCAGATGATTCAAGTGCATTACACTTACTATGTACTTTATTTCTGTTATTACACTGTGATATATAATGAAATAATTGTACAGCTCACCAAGATGCAGAATCAGTGAGAGCCCTGAGCTTGTTTTCCTGCAACTAGATGATCCCATCTCAGGGGATGGGAGACAATGACGTCTGAAGTGTGTTGCTTATGTCCAGTCTACTCCATAATCTCCAGTCTGTGACCTGGGGGTTGGGAATCTCTGTTACAGAACTTTATACAGTTATAGGAATGTGCTTTACTCAATAAACTATAATACCAGCTGCTGCTGCTAAGTCACTTCAGTCATGTCCGACCCTGTGCGACCCCATAGACGGCAGCCCACCAGGCTCCCCCGTCCCTGGGATTCTCCAGGCAAGAACACTGGAGTGGATTGCCATTTCCTTCTCCAATGCATGAAAGTGAAAAGTGAAAGTGAAGTCGCTCAGTCATGTCCGACTCTTCGTGACCCCACGGACTGCAGCCCACCAGGCTCCTCCATCCATGGGATTTTCCAGGCAAAAGTATTGGAGTGGGTTGCCATTGCCTTCTCCATAATACCAGCTAGCTACATGTTATTAGGACTTAAAACGTGGCTAATGGAACTAAGGCAGTCAAATTTTCATTTTATTGAATTCTAATAAATTTAAATAGCAAATTTTTATATATATTTTTGAAGTTCTTTATTAAAATTTAATTAGTACTTTACTAGAAGTATTTCTCTAGTGACCTAGGAATTTTTCCTTTTGGTACTCACAAGGGCCTGACTTTAGCTACCCACAAGTAATATCTCAGCAACTTCCTGCTACCCAACAACCCAACTAGGCAATCTGGTATTTCTAAAATCCAAGCATTTTTTCTGGAACTCACTGGAACGTGACTAGAAGTGCCACCTCTAGCAGCTTGACAATTAAAAACTTGACTTTGGAGCTACCTACTATCATTCTTGACACTCCAGACTCTTATGCTGCAGCTTCTGGACCAGATTGGTACTGTAAATGGCAGCAATAACTTGACATCTAGCATAAGCTCCCTAGGAGAGCCTCTGCCAGTTCCCTTGACCCAAATTTTGATCTTAAGTTTGAATGGTTGAAGTGTATATTAGGACCACCGTAAAAGGAATTTCCAGGTTATAGTGTCAGCTGCAGAGAGCTTTAGTATTTAAATTGTGGTATCTAAGGTTAATTGGTACAGGCAGTATCCAGTTTGATATCAATCAATATCCACAAATTCAGATTTAGTCAAGATGGAAGAGAATCTAAAAGTACTTTTAAATAAAACAAATTTCATTACATATTTTTGGAACTTTGTGGTAAGCCTGGATACTTAGAGATAAGAGTATCAGTGATATTTAAACCAGGACAGTGTATCCAACATTCACTGGAACATTAAAAAAGAACTTCTGAGGAACTATTTGCTTGGGCTAGACATTTGGTATCCTAATAGCTGGTGCTAGGAAAATAGCTGGGGTTAAGATCTAAGAATTTACCCTTGTCTCTAAATCATATTTAAAGACATTTTCATAGTTTTTAAGAATCACACAACTTCTTATTAAATAATATCCTTTTGGTAACCAAGTCATAATTCTAAATCTCCCACATAATCAGAGAACACTGATTCTTATCCAGGAAGTCAACCAACTGGTTACAAACTGGTGCTACTACTGTGAGCTGCTACTGTTCACTGGTCTTAAAAAAAAATTGAACTTTCATAGTTGGTGTCATTTTAGTCTTTGTGGCAAAGACTAACTTTTGTCTCATGGACATTTAGAGAAGTCTTCAGAGTATAGTAAGAAAACATTTGTTTCTTTTGTCTTAATTTAGCTTTTCCTATACTTTAGCTTATTTTATTTAGTTTTTTAGCATATAATAAGCAAAACTGTGCTGAATGTTATACATTCAGTCTGGTTGCTCTTCATAAATACCTGTATATAAAATAAACTTGGTTAGACAATTTGCCTTAGGTTACACAGTATTGGGCAGAATCATGACTTTACCATTATATATTATAGTTCTCTCACATGGGTAAGATAGTAGTTCATTAAGAAAATAATTTTGTGTGTCTAGTCCTGTATTGGTTAGAGAGACACATCAAACCATGTAATCTTAGTTCATGTGTAGATTAACACTGAGAACTTTCTTACTTGGAGAGATAAGTTAAACTTGTTCTTTGTGTTCTTGTAAGTTTTAATTTTTATTTATCATGTGAAAGATATTTTAACAAAAATCAGTAGTTGAACAGAAATAAGTTATGTACAAACTCATTATGTTAAATGAAGTGCATTCATTTTCTGTGTTCCAAATATTGCATTATCATTTTCTTATATAGATGTAATACAGTGAAGGCATAAACTTTTAAAGTAACATTTATATTTTCTCTTCTTTTCTACAG
Seq C2 exon
ATGGCTGGTACCATTGATATGACTCTTCAAAGTGACATTATGACAATGTTTGAAAACAACTTTGATTACAACTCAGTTTTTTGATTAACCATCAACTTAAATGAATTATAAAAGATTAAAAAGCAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003724:ENSBTAT00000017938:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.780 A=NA C2=0.333
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]