RnoINT0029036 @ rn6
Intron Retention
Gene
ENSRNOG00000034015 | Capn2
Description
calpain 2 [Source:RGD Symbol;Acc:2268]
Coordinates
chr13:100923393-100928811:-
Coord C1 exon
chr13:100928149-100928811
Coord A exon
chr13:100923463-100928148
Coord C2 exon
chr13:100923393-100923462
Length
4686 bp
Sequences
Splice sites
5' ss Seq
ACGGTAGGA
5' ss Score
8.6
3' ss Seq
CTCCGTGTGTTTGTTTCCAGGAG
3' ss Score
10.49
Exon sequences
Seq C1 exon
CTGACTCATTTGCTGTTTCCTGGACAGTCATTGCTGAGTTTCACCCTGCCTTCTTCCCGTTGAGTCTCAACTTTCGCACCCCAACTTGCAAGTGCCCTCCCCCACCCTCCTCCACGGCAACCGGGCCTCGCCATCCCGGGATCTGTCCGAAGGTGGCAGCATTGGCCCCTCAGTCCTCCACGGTCGGGCTGTCGCTGTGCAGGTCGCCGGCTGGCCGCGTCCGGAGCCCAGCGCCGAGCAGGCCTGGAGAGGCGGAGGCCACACCCCGCGCGCGGCCCAGGCGCTTCCCGCCGGTGAATCATCCCCGCAGCGGCAGCTCCCGCAGTCCGCTGCAGCGCCCCGGGCTTGGCCGCGCCCCAACCGAGTGCTGCGCCCCGCCTCTCCGCGACCCCTCTCTCTGTGCTGTGCGCCATCCCGATCGCTACCATGGCGGGCATCGCGATGAAACTGGCCAAAGACCGCGAGGCGGCCGAGGGGCTGGGGTCTCACGAGAGAGCCATCAAGTACCTCAACCAGGACTACGAGACACTGCGGAACGAGTGCCTGGAGGCCGGGGCGCTCTTCCAGGATCCTTCCTTCCCCGCCCTGCCGTCGTCCCTGGGCTTCAAGGAGTTGGGGCCCTACTCCAGCAAAACTCGGGGCATCGAATGGAAGCGGCCCACG
Seq A exon
GTAGGAAGCGCGAGGGGAACGGGTAGGGCCGGGATGGCCTGGAAGGGCACTCGGGGTTCCGGGAGGCTCCAGAGGGAGGCTGCGAGCCCCAGGCTACCGGGTTTGGTAGTCCTGACTTGGTAGTGCTCCTCGATTGCTGCTAAGGGGACTCCAGATGCAGGCTGAGGCCCACCCAGTGGACCTGTCTCAAGCTGCGCCCAGAGCGCTTCGCAGGACAGGACCCCAAATCCCATTAAGTGGACACGCCCTGGGCCTTCGGCTTCGGCTTCACACAGCAGCAGGGCCGCTGGGGTGAAACTTTTATTGGACTTTAGTGGTGAGACGGAGGGAGGAGACATGGGTCAGCTGTGGGGGGTGGGGTGGGGATATCGGAGTTAGGTAGAAGACTCTGGATTGCTGGGGTGAGGGGTAAGGGGCGGTCACAGACTAGCGCTGGCTAACATAGGTGGTCTCAAGTACATGAGGTAAAACGTTACATTTATCCAACTTGAATCTAGTCTATTTCTCAAAGTGCAGTTAGAGGATCCCTCCTCCAATATTGCCCAGGTAACTTAAAGAATCGAAGGGCTCCAATGATCCTGTTACTCATTATTTTGCTGGCCTAGAGTCCTCACCTGGTAACCTCTGCTCGACTCCTAGATGCTCTTGTTCCAACCCTCAGGGCCTCTGCCCTTGAGCCCTTCCCTTTCCCTTATGGTTTAAGGGTTCAGTAGAAGCCCTGCTGGTCCTCATCCCATGGGACCCCGCTTGACTTTTCCAGGGAACAGAGAGGAAATCTAAACTTTTAGATTCCTGTTAGGACAATGGACATTCATACCCTGCTTTCATACTCTTGGTTCTCCCAGGCTGCTTTTGTTATCCTGAATCTAGTCCGAAGTACCCTGGACTAGCTGGGGTGTGGCTCAGCTGGTAAAGTCTTTACTCAGTACGCCTGAAGCCCTGGGTTCTAACCCAAGCACCACATAAAATCAGGAGTATGGTAATGTATGCCTGTAATCCCAGCACTCAGGAGGCGGCGACAGGAGGAGATCAGAGATTCAAAGCCAGGGGCCATAAAGATGGCTCAACCTACTTAGTTCTATCCCAGAACCCACCTGGAAAAAGAGAACCAGCTTCCAAAAATTGTTCTCTGACCTCCACATGCACACTGTGGCACACAAGCAGAGTCTCACAGGCACGTGCGCGCGCGTACACACACACACACACACACACACACACACACACACACACACTAAATAATAAACGACGGAGACTGGTCTGGGTTATGCAGTGCATTTGAGGCCAGCCTGGACTACATGAGATCTTGACTCAAAATTTAAAAGTCTCTGTGGAGCAGGACCCAGAGCACCTGGGTACCTTGGATGGCTCACTGGCTCTCTCTTCCTCACCTCAGCTGGGCGTGGAGGTACACACCCTTGATACTTTGTAGCTTTGGTTGCTTAGTAAGTTCGAGGCCAACCTGAGCTACAAAGTAAGACTGTGTCTCAAAATTAAATGAAATAAAAATAAAACAAACCAGACCTCTCTGCTTTCTCTCTTCCCTAGCACCCTTGGGGCAGCTGCCATGGCTGGTGTCCCCTTCCTGGAGACCCCGTTCTTCTCTCTTACCCTTCTCATCTCCCAGGCATGCTCTTCCTGCAAGTCTGGCTCATTCACATTCTTTCCGAGAGTCCTTTTCCACCCTGCTGTTCTCTGTCCAATGCTCATTTCTGTCCTGGAGTTGTCACCATGAACCAACGCAGTCACATGTTTTCTTGCTTGGCTGAGCTGCTGTGTGTTATTTGCCATGTGCTCTCAGTGTCTTGCCAGGGTAGTGTCCCTTCTCAGGATTCATTCACTCACTCATTGATTCACTCATTCAATCACTCACCAGCATGTAGGGAGTGCTTACCTTAGCCCAGGCATTGGGACATCCATGAACAACAAGTCAGCAACTAATTGGAGAACGAATGAATGAACAAATGTACAGTCATTATGAACCTCAGATGACATCCGGCTGGGGAGACGACTCACAGACAGGAGAACGTGTTCCTTACATTTGCTTACTGTTTTACAACTTCTTATCCTAGTATCATTTCTGTGGTTATAAGACACCCTAAGCAAAAGCAACTAAGGGGAACAGCTGGCTTACAGTTCCAGGCTACAATTCATCATTAAGGGGAAGTCAAAGCAGGAACTCAAAGCTGAGGCACGTTCACCACCCACACACATACTGAGTCCACGGACCTTCCATTCAGTCGATGAGCAGTGATTGAACACCTCTTTTATTCCAGGCACAGTATACTTAGTTTCTGTCTCTGAACCCACGGAGGGCAGAAATGTCCTTCAACAGGTGACAGTGCCCGTGGACCTTCTGAGTAGAAAAAACAGAATTCCAGAGCCACTTCAGGGACACTGCCTAGGGCAAGCGGGCTATGCACCACACATCTTCATACAGTTGGAGAGACCAAAGCTTAGGAGTGTCAAATTTTCTCAAAACAAATAAGGACTGGAGCCGTGGCATGGCTGGACTACCTGTCTTGACCTGTCCTGTCAAACACCCGTGACTTGATTTAAGAGTTGTTTGGCTGTGAACAACTTGAGTTTGCTAAAGGTTGAATCACGAAAGAGGAAGGGATTAAAGGTGACTTCCAGAGAAAGCAGGACAGGCAAGGGAGCCGGTTAGCCATGTTGTGGGCTTGGGAGCTGATAACTCTTCCCGAGAGAATGTCATAGCACTGGCAAGAGAGCTCTCCACTGCAAAGAGATGACATAGACCATGACCACAGCCATACTGAGGGCAGTGGCCATGCCAGTCCACAGTGACGAGTGGCCCAGCATCATCTAAGGCTGGCCCATGAGGTCCTCCCAGCTGTCATGATAGAGTATTTGCCAAGGCCATTCACCTGACCCTGAGAACAGTCCTCTGTGGTGGTACACTTGTCTTCTTCAAACCCATTGTACAGATTCGGAACAAGCTTCAGGATGTCAAGTAACCCACCAGCATCCCAGGCCTTAGGCAATAAACGGCAGGGCTGAGATTCTCAGTGACTTATCAGAATCCAAGGCTCAAGCCTTCTTCCTTCTATGGCTACATTGTGTTTCATTCCAGGCTCCACAGGCTGTGACTGGGGCTCAGTTTTCTAAAGTATCTCTGGGTTGTGAAGTCTGAACTTGGACTTCTCTGGAGACCCTGAGGCAGTCTCTGAAGTATAATGGTAGCCCCCTTCTGAGATAAGAGCTTGGCTCCTGGATGATCAGTTTGACAGAGGCTCCTGGAACCGAGCCCAGTCTGCTCCATCCCCGGGGTTAAGTGCTTGCCTGGCAGGCCTTAGGAAAAGTTGACTTCCCTGCTCGGACAGAAATGCTTTCTCATTGCCTGGCGGCATTGCCCCTGCATCCGCCAGGCAGACTGATGGGGAAGCAGGAGGTGAGCATGCTGTGTGAGCTCCTGTGCTGCTGGAAACTGCCAGGATAGACCCAGCTCTCGCCCGGGGAAGAAGACTCCTGGTAGACAGAGTAGTGCCAAGAGTCAAAGCCATACTGCAGATGCGACATTACTACTGATCAGCTAAGATTCGGGCCCTGACTTCCTTTGTGGCTTTTGGGTGGAGCTCTTCAGAATCCGGAAACATCCAGAGGCCTGCTGGAGGGCTGAGCCCTTCCACGTTGGCTGTAGGGAGCAACCTCCTCAGAGGCATTAGGGTGTTAGCACTTCACACCAATGAGTTCAAACCCCCCGCAGTCTCTACCACTGGGGATCCTTGAAGCTTTGAGCAATCACTTTACCTCCTGAGGTGTTCTCCACTGGAGAACAGGAGGAGCTGACTCCATCTTGACTCCCCAAAGGGCTACAGGAGGTAAATCGCCATGCAGTGTCTGCGCAGCAGGTGCAGAAGGCATGAATTCTCTGAGTGCTGGGAGAATGCAGAAGGGCTGGATTCAGCCCCTGTCCCCAAGAAGCACTTGTATTGGAAAGATGGAGGAACAGGCTGGAGAGATGGCTCAGTGGTTAAGAGCACTGACTGCTCTTCCAGAGGTTCTGAGTTCAAATCCCAGCAACCACATGGTGGCTCACGACCATTTGTAATAGGATCTGATGCCCTCTTCTGGTGTGTCTGAAGACAGTGACAGTGTACTCAAATACGTAAAGTAAATAAATATTAAAAAGAAAGATGGTGGAGATGGTGGAGGGCCCATGAGTGTCACCAAACTGATTTAGGTTCTCAGAAACGCTAGGCCAGAACTCAAAGGGAAGGGTGGGGACAAATGTGGAAAGTAGGGAAGGAAAGGATCTTGAAACGTGAACAAACCATTTGGGAAATGTAGGCAAAGGGAGAATGATGTACAAACCCAAGCAGGCCCAGAAGAGAAGCTTCCAGAATGGTGGGCAGGGGGCACTTGGTGTGGAAGATCCCAAAGCCTAGCAGAGGATGCTGGATGCCTTCCCTGGCCCTGGTAAACAGTATAATGGAGCAGGCTGCAGGAAATTTGGAGTGTGGGGAGTCTGGTGACTTCCTGGAAACCTTCCCCCACACACACACAGGACCAATGAAATGGGGTCACATAGACCTCTTCCTAGCATGGAGGTCTGACAAGAACCATTCCTCAGGGCTGAGCAGCATGAGGAGGAGCGGCTTGAGGCAACCCCAGGGAACCGAGGCTCCTGTCCACGGTGCTGACCATGCTCCGTGTGTTTGTTTCCAG
Seq C2 exon
GAGATCTGCGCAGACCCCCAGTTCATTATTGGAGGTGCTACCCGCACAGACATCTGCCAAGGAGCCCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000034015:ENSRNOT00000045326:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=PU(11.3=43.0)
A:
NA
C2:
PF0064816=Peptidase_C2=FE(7.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]