RnoINT0040113 @ rn6
Intron Retention
Gene
ENSRNOG00000020525 | Col5a3
Description
collagen type V alpha 3 chain [Source:RGD Symbol;Acc:70922]
Coordinates
chr8:21792964-21793278:-
Coord C1 exon
chr8:21793225-21793278
Coord A exon
chr8:21793018-21793224
Coord C2 exon
chr8:21792964-21793017
Length
207 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGT
5' ss Score
10.9
3' ss Seq
GGCTGCTCTTGACTGAACAGGGG
3' ss Score
6.08
Exon sequences
Seq C1 exon
GGTACGGATGGCATCCCAGGGGAGAAGGGGAATGCTGGTGATATTGGGGGACCG
Seq A exon
GTGAGTGGATAGCAAGGGGCTGTAGTGCATGGAAACTGAGTAGAGTTGGTGATGGGAGAGTTGGGTACCCAGGGCATCTGCTGGGGCCCCTGTGGTGTCCCTGACCCCATGACTGTGAGTGGTTACAGGGAAAGGGAGGTGCTGGGTGGAGTCTATGGAACTGTCTTCAACTGTGAGCTGATGCTGTGGCTGCTCTTGACTGAACAG
Seq C2 exon
GGGCCACCTGGAGCTTCAGGGGAACCTGGTGCCCGTGGGCTCCCTGGCAAGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020525:ENSRNOT00000027897:53
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]