GgaINT0039349 @ galGal3
Intron Retention
Gene
ENSGALG00000005180 | COL11A1
Description
NA
Coordinates
chr8:12007166-12008439:+
Coord C1 exon
chr8:12007166-12007219
Coord A exon
chr8:12007220-12008385
Coord C2 exon
chr8:12008386-12008439
Length
1166 bp
Sequences
Splice sites
5' ss Seq
CCTGTGAGT
5' ss Score
7.21
3' ss Seq
CCTATTGCTTTCCATTGCAGGGT
3' ss Score
10.17
Exon sequences
Seq C1 exon
GGTCAAGATGGTGTTGGTGGAGAAAAGGGTGAAGATGGTGATCCTGGTCAACCT
Seq A exon
GTGAGTTGTTTCTGTCATTTTGTTTTGGCTACATGTTTTCTCCTGTGCTGAGAAAATACTTTTTGCTGAATCAGTGTTTTCTATAAATTCGTACTCTAACAAATATTTTCTAAACAGATTCTCTTTGTATTGTACTGAAAAATCTCTTTATTTCCTTGTAGAAATAGAATTACCTATATAATAGGTACAATCAAAGGCAAGAGGTCATTTCTTTTAGAAGGAGAAATAAACAGTTCATTAAAGATTTGTGCCAGAGCTGCTGAGGTGCATTAAAACGATAGCAGTCCTTAGTATAAAAAAGTAACGCTGAAGCCAAATAGTCTTCATTAGCTCTTTATGAAGTGAATCTAAATCTTGGAATTTCTACTGTATTTCATGTGAAGTCTAAGAGTTACCTAAGCAGTATTATTCAATGCTCTTAACTTTCTGGAGATTTCTATGTTAAAGCATCATGAATATAATCTTTTACTGCAGAAAGCTAGGGCTTCCTTTTTGGAAGGTCTCTTTACAGCTCTGGAATTTCTGAGTATCAAGGAAATATTTTATACAGTACAATGTGAAAGAAAAAATACTAGTAATTCAACATATGGTTGGAACTAAGTTATAAACCAGAGTTTAAATTGAAAAGTTCAGGATGAACATCTGTATATCTAACTTCACAGTAAGTACCTTTAGAGTGTTGTGCTCATGAAGAAAAACTTATCAAACTGTTCAGTAGACCTGAAGTCTTTAAAAGAGAATCACAGCATACCTGTATGGGGGAGCCAAATGGCTGTCAGTGTAGAATATTTTCAATAGAAGGTGACTTACTGGGCAGCTAACTTACTAGGAAAAATTGAAGGAAAATAACAACTTCAGCACCCAAGAAAGCAAGAAATACTCTTAATCAAGTTAGTCAGTAGATTGTACATTACTTCTGTGCAGCCACTTCCAGAAATGAAATGTTTTGTTTTAAACAAGAAAAAAAGAGTAGTTACATTTTGTAAAAACCTGTTAAAAACTGCAAAAGATGACTCTAAGAAAGGACTTGCTGAGTAAGCAAGTATCGCTTCTGTATGATAATTACTTTCTGTCCATTGAAGGAGATATTGCAGATGTTCATTGCAGTTAAGAAAGAAAATGATTGTATATATTGTTACCACTGAACCTATTGCTTTCCATTGCAG
Seq C2 exon
GGTCCACCAGGTCCTTCAGGAGAAGCTGGCCCACCTGGTCCACCTGGAAAGAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005180:ENSGALT00000008321:53
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]