RnoINT0044308 @ rn6
Intron Retention
Gene
ENSRNOG00000021924 | Cyp2c22
Description
cytochrome P450, family 2, subfamily c, polypeptide 22 [Source:RGD Symbol;Acc:620368]
Coordinates
chr1:259270446-259273105:-
Coord C1 exon
chr1:259272945-259273105
Coord A exon
chr1:259270620-259272944
Coord C2 exon
chr1:259270446-259270619
Length
2325 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
TGCATTTGTTTCTCTTCTAGTTG
3' ss Score
9.64
Exon sequences
Seq C1 exon
GGTCCCCCTGTGACCCCAGCTTCCTTCTGGCCTGTGTTCCCTGCAATGTGATCTCCAGTGTCATTTTCCAGCACCGTTTTGACTACAGTGATGAGAAATTCCAAAAATTCATAGAGAATTTCCATACAAAAATTGAAATTTTAGCATCTCCTTGGGCCCAG
Seq A exon
GTGAGGTTCAGCTCTATTTATATGTGAAATATCATGTACCCTGGTCTGTCCTCTCACCTTCCAGGAGAAGGTTTTAGATCTCTTGGAACTTGAGTTATAGGTGGTTGTGGGCTACGTGACCCAAGTGCTTAGGACTGAACTTGGAGCCTCTGCAACAGCAGCCCTTGTTCTTAACTTCTGAACCATCATCTCTTGAGACCCAATATTAGCTTACTGTTTGTTTAGAGGCCACTAAATTGCTGGGTGTAGTGATACAGCCTGGGCCGCATAATAAAATTCAGGCCATGTAAGGTTACCCTGACATAAACATTTCAAAACCAGGCAGGCAGACAGACAGAACAAAACAAGAAAACTGTGAAGAAAAAGCCAACCAAAAGTATATTAAGATGGTTTAGGTGGCTTTAGGTTGCCTCTTGTTCACAAAATTTCTAGGTTATTTATTATTGTTCATTTTTGTGTTTTTATGATTCCTAACCAATTTATGAATTATCTGCCTCATTTAAAACTTAAGGGGAAAAGATATGAAATATGATATGAATAGAAAAAATTGTAGTATCAGAGGGTTTCATTTTTTAAAAATTTTTATTATATATTTCTTTACTTACATTTCAAAGGTTATTCCCTTTCCTGGTTTTCTGTCCATAAGCCCCCATTCCCTCCCCTCCTCCTCCCCCCATGGGTATTCCCCCTATACATTCCCCTTATTGCCCTCCCCAACATTCCCCTGCACTGGGGGGTCCAACCTTGGCAGAACCAAGGGCTTCTTCTGCTTGTGCCCTAACAAGGTTATTCTCTGCTACATATGCAGTTGGAGCCGTGGGTCATTTCATGTATAGTCTTTCAGTAGTGGTTTAGTCCCTGGAAGCTCTGGTTGGTTGACATTGTTGTTTTTATGGGGTTGAAAGCTCCTTCACCTCTTTCTATCCTTCCTCTAATTTCCCCCAAGAGGGTCCTGTTCTCAGTTCGGTGGTTTGCTGCTAGCATTGAGAGGGTTTCATTTTTATCAAAGCATTTCTTTTGGAAAACAACAAGAAAACAAAAACAGCAACAGCAAAAACAGCAGCAACAGCAACAGCAGCAACAGCAAAAACAGTAACACTTTTTTGATTTTGCTCAATATTTGGGGAACATATATTTAGGCTACAGAACGCATTTCTTACTATGGTGCCTGGCCAGAAGATGTTTCTAACCTATACTGTAGAACCACAGCCAACCTTGTTTCTATAGACTATAATGGCAAAATATGTTCCACGAAACAAGGGCAATGGGGGACAAATAGTTTAGCTGCTTTATTTGTGGGGCAAGGAGATGAATCCCAGCCATGCGAAGCACATTATTCAGAGCAGCTCTGGCTTGCTTTATTTCATTAAAACGGTTTAAGTAATATTTCATAATAAGATGGCAGTTGAATATAGAATGTCCCTACTCCATACTTTTCCCAAATTAAAAAAAATACAGATTTTAAATAGCTAGGCACTTGGTGTGTTTTAAAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTGTAATGAAATATATACAGCAGAGAGAACATGGAGGTGGATGTTACACATATATTTGCGATTATAATCACATCATTTTTCCTTTCCTTTTTTTTCCCACCCAGTTCCTCCCATGTACTTGGTCCCCCTTGCTCTCATTAAAATCCAAGGGTTTTTTTCCTTTTAAATTTTGTTACATATATACAAAGATACATATCTATCTATTAGTAAAACCTGCCTGGTTTGTTAAGTGTTGTTGCATTTATGTACTTCAGGGCTGATAACTTGATATTATATAACTGATTAGGAGACATCCCTAGAGAAGTTTTATTCTCCCTCTCTCTGGGGTCTTTACTCCTATAGGGGTGGAATCTGATGAGATTTCTACTTCGACTTTAGCATGTCTACTAGTGTTTCCATTTCTTCAGGTGACTGGTGAAGTCTGCAGCAGGTAGACCGGGATATATATAGACTGTGTCTATCCCCGCTATCACTAGTTTGTTGCCTCAGAATTTCTGACTAGTCATTCCGCATCTCAGTGTTCTCAACAGGGCAGATGGGACAGTAGCATTAGCCCGTACACTCCTCTGGAAAATCTGTTGTCAGGAATTAAATGTGGTTCGGAGTTGCTGTACAGGCTGTGTGCACATGGTAGATCTGATAATTTGATCCATGTTGTGCCTGTTTCTCCAAATGCCGGGCATCTAAGAGCACAGGGAGGCATGTGAAACTCGCCTTTATGAAGTATTGGACAGCTAGCTATGGCCCGGAAGGTTTGCTGATTGTATGAATGCATTTGTTTCTCTTCTAG
Seq C2 exon
TTGTGCAGTGCCTATCCTGTTCTATACTATCTCCCGGGAATCCATAACAAATTCTTAAAAGATGTGACTGAACAGAAAAAGTTCATCTTGATGGAAATAAACAGGCATCGAGCATCTCTGAACCTCAGTAACCCTCAGGACTTTATTGACTATTTCCTGATTAAAATGGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021924:ENSRNOT00000054724:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.6=100)
A:
NA
C2:
PF0006717=p450=FE(12.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]