RnoINT0044310 @ rn6
Intron Retention
Gene
ENSRNOG00000021924 | Cyp2c22
Description
cytochrome P450, family 2, subfamily c, polypeptide 22 [Source:RGD Symbol;Acc:620368]
Coordinates
chr1:259264081-259269584:-
Coord C1 exon
chr1:259269443-259269584
Coord A exon
chr1:259264269-259269442
Coord C2 exon
chr1:259264081-259264268
Length
5174 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGA
5' ss Score
9.46
3' ss Seq
CATGATTTCTACCCTATAAGCTA
3' ss Score
2.22
Exon sequences
Seq C1 exon
GAAAAACACAATGAAAAGTCTGAATTTACCATGGACAACCTGATAGTCACCATAGGTGATCTTTTTGGAGCAGGAACAGAGACAACGAGTTCCACCATAAAATATGGGCTTTTGCTCTTGCTGAAGTACCCAGAGGTCACAG
Seq A exon
GTATGATCAGATGGGCAAGGGGTGTCCAGTAGAAGTGGGTAGCGCTAGAAATTTCTCCACTCTTTCCTTGAATAGACTAGCAACAATTGCATGAATAATAATGCACTTACCCACCATTGGATGAATTCAATTCAAACTATACCTCAGAAAAGAACAAATGTAATAGCTAAGGTAAAGCAGGGAATAGAAGGGCAGTGGCCATTACTCTCCCTGGTAATGATGTGGAGTCATTGATTTGTGTTGGGAAGAAAAACAGAGCTTGTGTTATGGTCTGAATAGAACTATCATCCTTCTCACACTTCCCCTACATGTTAATAAATGCTTGTTTTTTCAGAAGTATTTATTAAACTTTTGTTAGCACGTATTAATTATAGGCAATGATGTGCTTCATTACAACATTTCCCTACATGTATAACTATTTTGATTATTCCTCCATTCCTCTCTCTCCCTCCCAATAATTCCCTTCCTCTTACCAACTGGTCCCTGTTGCTGTAAAATTATGGAAAAATGTTGTCTTCTATCCTGCACTAGATCTGAGTCTGTCACGCCCCGAGACATCTGTTAGATATCTTCATCTCAGTCAGCAAACTGTCTCACCCACTTTACTTCATCCCATATCACACTGCTGATGGCTACTCTCTGAGCTTGGCAGCAATCTCTCCACCCATCTAGTTCCCAAGGCAGGTTGTTACTATGTCAGACATGTACATCCCAAATCTGTGGCAGCCCAATGTCTCCAGCCACCACATACTTTATTGAATTCAACTAAATCGTCACATGAAAGAACACACAGCACAATAACCTCTGACCCAATTGGTAAGATATAATTTGCTCCTCTAGACATACAAAGCCCTGTGCAATCCACCCTTTAAGAACGTCAATAGCAACCTGTAAATGTGCAGAGAGGAATCTTAACATCTGCCTCCATGTTCTCTCTGCTGCTCTCTCTTTCGCTCCAGTCTCCTCCTCCTCCTCTCTAAAACTTTTCTCCCACCCATCCTTCCTTCTTGTCCAATGACAGGCCTCGTTCTATCTTGTACCTGCCTTCACTTTCGTAAAGACATCATCCTACAGGTCCCTTTGGTACTTTCAAGTCTGGTTTTCTTCCCTCAATAAATCAATAGTTTTAGAGGGGCTGATGTAGATGTATCATTCACGGCTGAGCATTTAAAAATCACTTATTTTATCCTCACTGTCTAGTTTCTACAATAACCTCTACCAGCTGTAGGAAGATTCTCTGACTGAAATCTGGAGAAACATCAATCTACAGATATAAACATAAATCTTTAGAAGACAATTGGATGGGAACATCATATTAATTTTGCAAATCAACAGTTTCCCCTTGAGTGCCTGTGACATTCTTAACCCTTTGCCCTGCCTTGCAGTACCAGACATGAATGTTGTCCTATTAAGATTGATTGAAAGCTAATCAAAATCAAGTTATGAAAGAGTATGCGGCATTTGTCTCTTTTGGGCCTGGATTGCCTCATTCAATATGTATTCTCATTCTGTAGTCTTACCTGCAATTTTATAATCTCGTTTTTGTCCACAGTTGAATGACGTACCACCATGTATAGCATTGTGATTATCCATTCACCAACATATTGACTGATTACATATCCTAGCCTTTGTGAGTAGAACAGCAATGGACTTGTGTGAGGAAGTTTCTCTGCAGTAAGAAATAGAGTCTTTAGGGAAAGGACCCTAAAGTGTCTTTAAGGACAACTCCCGTGTTTCCTAAGTCATTACACCTGCTGCTCATGGAGATTCATTTACATAGAATGGCATATTCTCATTCACTCTCAAATGGGAGTGTATGTGTTTTCATTTGCTTCAAAGTAAAGATCTAACGTAGAACATGGTAAACATAATCTTTCTACTCGGGTTTTTATATTTGGGTTATTAATTTTATTTCCAGCCTTTTCGAGAAATTTCTATACTCATTAGCTATTGCAAATAGGGCAGCAATGAATATGTATGAGCCAGTACCTCTGTAGTATGATAGTGTTTTGGGAAAATACGAAAGAGTGGTATGCTTTCATCATTAGTAATCCTATTTCTTGTTCTTTTGAGAAATCTATACTGATTTCCACAATGCTTGGGCCAGTTTGCACTCTCACCAACAGCAAATAGTGGTTAGTTTTTGATCGTACCCTCAACTGCATTTGATATTAGATTTCTTGATTATAGCCATTCTCGATGGAGTGAGATGCATTCTCAAAGTAGTTTTGATTTGTGTTTCCAGGACGGTTCATGATGTTGAATACTTAAAAAACTCAACAAAACTTTACCGGCCACTTACGCTTCATTTTAAAGACCTCTGTTCAGAACTGTAACCCACGTTTAGACTGGATTATTTGTTTTTATTTAGAGTTTTGTGTTCATTGTAAATTCTAGATATCAGTCTTGCATTAGGTGTGTAGCTGAAAATGATTTTCTCCTGTCCTGTTGGGTGGAGGTGGCTACTGTTGGGCTAAATACTAAAAAAGTTACCATGCTACCACCGTTGGGCAGGCCGGCTGGTCTGGCCTGTTCTCATCTCCGCAGACTCTCTGACCTGTTGTTCTGAAATTTCCCCACCTGACTATGTTCGCAAGCCGGGTCTCTACCAGACCGGGCCCCACTTATCCAAATTCACACGGCTAGGCTAGCTGGGGTGTACTTCTCGCAAACCCATGCTTTCTCTCTGGAACCCAGCTGAGTTGCTGTGTGAAGGAAAACACCACACAATCTTAGTTAAGAACCAGCAGGTAACACAATCGCTGGGTGCAGCAGCAGCTAGTATCCTAATTTGTAAGTTATTCTAAGCCTAGGGCCTCTTGTTTGCTACAGCTTTCCTCCAAGTTCTCCCTGACCAAAAAGCAAGTCACCTTTTCCTGCCTCCTCTCCTCCCCTCTCCGACCCAGAAGTCCCGCCTACTCCTCGCCCAGTGATTGGTCATCTGAAATCTTTATTCATTAGGGGAAGGTTCTGCCACAGGCTACCTCTTCACTTTATTTACAGCGTTCTTTGCTCTAAAGAGACCTTTTAATTTCATGATGACCTCATCAATTGGTGCGTTTATTTCATGAATGAGTTGTGTCCCATTAAGTCCTTTGTACACTTTCCCCTACAACCAGCCCAACTCCCATAGCCTTACCGAAGCCTTTCCCCTCCTTTATGCCCATGTGTTCTTTTTACCTATATTCTGTCTTTCTTTATTATCGAATTCTACCCTTCCTTGGTCTCCACACTTAAAATTGTTCATATTTATCTACATATATGTAGCAGGTTAGGATCCACCTAGGAGGGAGAACATGAAGTTTTTTCCTTTCCGAGTTTGGTTCACCTCAATATTATTTTTTCTTATCTATTACTTTTATTGATCATTTTTTCAACTATTAAATAAAACGTTTTAATAACATGGAATAAGTCATTTAGGTTCCCAGGAGACAAAAATTTTCACTAATAAAATTAATAGTACTTACGGTTTCACATCATTTTCTTTTCTTTTATTGGATATTTTTTTATTTCCATTTCAAATGTTATTCCCTTCCCTGATTTCCGGGCCATAAGCCCCCTATCCCACCCCTCTCCCCTTCTTCTATAAGGGTATTCCCCTCCCCAACCACCCCCACTTCCCACCTCCCTGACATTCCCCTGCACTGGTGGCGGGGCGGGGGGGTGGTGGTCCAGCCTTAGTAGAACCAAGGGCTTCTCCTCCCATTGGTGCCCAACAAGGCCATCCTCTGTTACATACGCAGCTGGAGCCGTGGGTCTGTCCCTGTGTAATCTTTGGGTGGTGGTTTTTTATTGATCAACTTTATGTCATAACTTTTTTTTCACTGCTGAAAATCCTTCCATTCTTTATGTGTCCTACCTTTTAGTCACTCGTTCATCTGTTGATGAACATCTAGGCTGGTTCCACTTCTTTGCTTTCAATAAACAAGGATGTGTAAGTGTGTCTGTCATAGCATACGGGGTTCTTGGATGCATGTCCAGGAGTAATATTGAAGGGTCATGTGATAGATCACGTTTGAAACCATTGAGGAACCTCCATAATAATATTCATGATGGCTGTACTAATTTACTCTCCCATCAGCAGTGTATTCTGGGTGAGACAGCATCTTATTAGCACTCATTAAGAAGTGTTAATTTGCATTTTCCTGATGACTAGGGGTGTTGAACACCTAAGCAAATACTACTTATCCAGCTTTGTTTCTTCTTATGAGAAATTTATATTCATTTCATCTGTCAACTGTGGATTGGTAGATTTTCTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTAGTTTTTACAGTTCTTTGTCATTTCTGAACCATAGTCCCCTGTCTGAAAGATAGTTGGCAAAGAATATCCCATTCTGGGGATTCTGTTAGGTTTTTGTGTGGTTGGGTTTTTCGTTTGTTTGCTTGTTTGTTTTTGCTGTGCAGAATCCTTTGATTTTATTTGGTTCTGTCTGTTGACTCTTGAGGCCAGTGCCCTGTAGTAAAAATTTTGTTCAGAAAGTTTGTGCCTACATCTACGTCTTGAAGGGCATTCTTGATATTTTCCCTAGAAGCATCAGAATTTCAGGCTTCAATTAAAGGCTTTGATCTACTTTGGGTTGACTTTTACGTATACTGAAAGACATGGATATAATTTTGTTCTCATGCAAATGGATAGCCAGTCCTTTCAATACTATTTAATGAATAGACTGTCCTTTTCCCCCCACTGCACTGCATGTCTTATTGTGTGTGTGTACGTGTGTGTGTGTGTGTGTATGTGTATGTGTATGTGTATATGTGTGTGTGTGTATGTGTGTGTATGTGTATGTGTGTGTGTCTGTGTGTGTATGTATGTGTGACACTATTCTCAATGTGCTTTTTTGCTATTTGTTTCTCATGTTTGTTATTGATATATGGAAAAGGCATTGCTTTCATACGTTAACTTTCTATTCTACTACTTTGCTGAACGTGTTTATAGTCTTTAGGAATTCTGTGGTGGATCCACAAGTATCTCATTTACAGAATCTTATCTCTATATTAGGTTTTCTCCTCTTGCAAAATGGACTAATTTAGCTCTCTACTTCCTATCCCAACTAGAAAATGATCAAAAATCATAGAAAGGATAATTCTTTTTCACTTTATAAAAACCATGATTTCTACCCTATAAG
Seq C2 exon
CTAAAATTCAGGAAGAAATTACTCGCGTGATTGGTAGACACCGGAGACCCTGCATGCAGGACAGGAACCACATGCCCTATACGGATGCTGTGCTGCATGAGATCCAGAGATACATTGATTTTGTTCCCATTCCCTTGCCTCGTAAGACAACGCAGGATGTGGAGTTCAGAGGATACCACATTCCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021924:ENSRNOT00000054724:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.032
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.3=100)
A:
NA
C2:
PF0006717=p450=FE(13.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]