RnoINT0044365 @ rn6
Intron Retention
Gene
ENSRNOG00000012458 | Cyp2e1
Description
cytochrome P450, family 2, subfamily e, polypeptide 1 [Source:RGD Symbol;Acc:2475]
Coordinates
chr1:213517305-213518411:+
Coord C1 exon
chr1:213517305-213517481
Coord A exon
chr1:213517482-213518269
Coord C2 exon
chr1:213518270-213518411
Length
788 bp
Sequences
Splice sites
5' ss Seq
AAGGTACAG
5' ss Score
8.04
3' ss Seq
GTCTGTCTCCAACTTCACAGGAA
3' ss Score
8.03
Exon sequences
Seq C1 exon
CTTTACAATAACTTTGCGGATTATCTACGATACCTACCTGGAAGCCATAGAAAAATCATGAAAAATGTGTCTGAAATAAAACAGTACACACTTGAAAAAGCCAAGGAACACCTTCAGTCACTGGACATCAACTGCGCCCGGGATGTGACTGACTGTCTCCTCATAGAGATGGAGAAG
Seq A exon
GTACAGAACAGGACGGGCTCGCTGGGATGGGCAGAGTGCTTCCAGGTCTTACATTATGACCCACTCTCTGGTGTCCACGCTGAGCACCGTGGTTGCATCTTGATGACCATGGTTTTTCATAAACACACTTGGCTTCAGCATGACACCATTCTCTTCTCTGGTCACTTTTGGATGGCAGAGACCCTCTGTTCAACACCTTCCAGGCCAAGATGAACTGCAACTCTTTGGGAAATCTACCCTTGTCTGAGAAAACTTCAGCATACACTTTGTTATTTCTTAATCAATCAATGTTGCTTAAACTTCCAAAGTTCTAGGCACCCCTGCCTTCATTTTCCTGCAGCCTCTAAGACTCTTGAATGCCTACCCCTTACTTTCTTGCTGTAATGGCTTGAAACCATGTAAAATTCTACACTGATTTCCTCTAGATAATCTCCACTTGAGGATTGCTATCAGCTCAGTCTCTTTCTGTCCCTGGTCCAAAAAGCATGGCCTTAAGCCTGAAAAGAGGCTGAGCCTAGAGCCTTCAGCTTAGAAGGTCATTATCATTATCAGATAACTCTGGCACTTACCGAGGCAAGACCCTGTGGCCTGGTTAAGAAACCCTTTCCTGTGCTTTGCCTATTTCCTGGAAACATCAGTTTCCCTCGTCATGAGGCAGAAAGAGCTGTTTCCTGATAGCACAAGGAGTCTGAGAAAACCTGGTTCCCTCCCTGATGAAGAGCAATAGGCATCACTTTCTTACACCTAAAGAGATCTTACCAGGTCCCTGTCTGTCTCCAACTTCACAG
Seq C2 exon
GAAAAACACAGCCAAGAACCCATGTACACAATGGAAAATGTTTCTGTGACTTTGGCCGACCTGTTCTTTGCAGGAACTGAGACCACCAGCACAACTCTGAGATATGGGCTCCTGATCCTCATGAAATACCCAGAAATTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012458:ENSRNOT00000016883:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.021
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(12.7=100)
A:
NA
C2:
PF0006717=p450=FE(10.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACTTTGCGGATTATCTACGATACCT
R:
CTTCAATTTCTGGGTATTTCATGAGG
Band lengths:
310-1098
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]