RnoINT0044395 @ rn6
Intron Retention
Gene
ENSRNOG00000030466 | Cyp2j16
Description
cytochrome P450, family 2, subfamily j, polypeptide 16 [Source:RGD Symbol;Acc:1561242]
Coordinates
chr5:119492097-119495019:-
Coord C1 exon
chr5:119494857-119495019
Coord A exon
chr5:119492247-119494856
Coord C2 exon
chr5:119492097-119492246
Length
2610 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
3' ss Seq
AGTCTCTCTTTTTTCCCCAGGAA
3' ss Score
10.35
Exon sequences
Seq C1 exon
TTTGTGAAGAAATATGGAAACCTAATTAGCCTTGATTTTGGCAACATCTCAGTAGTGGTCATAACTGGACTGCCCTTAATCAAAGAAGCTCTCATCAACAATGAACAAAACTTTTTAAAACGCCCCATTGTACCTAGCAGGTACCGTGTCTTTAAAGATAATG
Seq A exon
GTAAGTTCAATTGGGAACAATATTGAATTCAGTGGGTTATTAAGAGTAAGACATGAATTTGGCTGGAAAATGGGATTCATGTGGGAAAGATTCAAGGTGAGCTGGAGAGAGGAAATGGGAAAATTATAGGATCGAGGTTCATTACACATTTATGAATTTTCAAAAGAGAAAAACCTACAGATAATATTAGGTTTCTGGTACAATATATGGTATAGTTTTGATATGTTAAAGATACCTCTATGTCTGTAATTTTACAAAATCCCAATAAATCAAATCCTTCATGAAATGTGGTTTATATTATTTTCTTCGCACCCTATTCACTTCTCCTCAGAAAAGGGTAAGGCCTCCATGGATATCAAACAGCCTTGACATATCAAGTTGTAATAAACTAGACATGACTTCAGTTATTGAAGCTAGACAAAGCAGCCCAGTTAGGAGAAAGGGATCCAAGGACAGGAAATGTTATCTTTAAAGTCAGCTGTTTTACCACATTCCCTAAATGAAAGTGACCATCAGAGGACTGAGAGTGTCTCCCTCTAAGAGAGACTTGGAGAAACCACATGTCCTGCAGACTTAGAGCCATGGATAAGAAGTAACAACAGCAACTTGGACAGCAAGACACATGTGCTCTGACTTCTCTTCTTTTTAGACTGCATCATCCACATAGGGATCTAGATCCTTCCAAATAGAATAGACTGGAATGAGTGCACAAAAAGATCATTAAATCGAGTTATGTATTTGAGCATTGAAAACAGACATGAAATATATTAACCTACAAAGGTTTCACTTTATCCATTTCCTTGTTTCTTCTTGAAACAGTCAACCATAAATTGAATACCATTGGCTACATTATCTGCTGTGATAAACACACTTATTCTCATAAGTGATTAATAGTGAGCAAGAAAGGTAAAGGAAAACATTCTCCTGTAGCATATAGTATCTAAAGGTCATATTTAAGTGGATATAAAGCTGTTGAGATTGGCAGGATAGAGCCCAGCTCTTAATTTTCATTATAACAATAAGAGTAGCTTTTGAGTGGTGTGGGTAGAGGAGAAGATCAGACTCCACATTTTAAGGCTCATTCAGGATGCTGGGTAGTGAACACAGGCATGACAGCAAAGATACTATCATTGTAAGTATAAAAGAAAACATTCAAACACTCAAGTTGACCAAAAAAATGACAACAGGTTAGACTGAAGTAGTATCACTAAAACCTCATGGACTGAAGTTATTCAAGAGAAGTCATCCTGACATATGACTTATGTACTAAGAAAATGGTGTGCGTAGACTGTCAGACCTGTGGGTGATAAAAAAGGAACAATGGCAGGAGAAACCATGATTCGTGCTATTGCCTTCGATTTGCTATTGTCAGGAACATAACATTGACTTCTGTCCTACATATGCTTAATCTACATTCCTGTAACTGGAATGTTTAGAGTCACATGCCTGACTCAGAGTGTGTACCTTCTAGGACAAAACTACAGTTACTATTCAAAGAGGTTATTTAAATTACAGACATTCATTAGATGTCCTGAAATATACTGTAAAAGGGAGTTTCATGCTTAGTCTCATAGAACTCCCACATTTCAGGATTTGATGGAAAAAACAAAATAAAGAAATTATGGAAAACATCTGCCAAAGTATAGAGAAGAAATTATACAACTGAAGGATCAAGAATTAAAAGGAGTATTTCAAGAAATAAATGACAGAGTTGTGAAAAGAAACATAAGAAAAAGCCAGGATCTATGGTGAAATAGTTGAACATTCTTCTGAAAGGAAAGAAATGGTCATGAGCATGGCATTATGTGTACCCTGAGACAGGATGAATGTTGAGCACACCAGTATTTACCCCCTCATCTCTCATCTCTCATCTCTCATCTCTCATCTCTCATCTCTCATCTCTCATCTCTCATCTCTCATCTCTCATCTCTCATCTCTCATCTCTCTCTCTCTCTCTCTCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAATGGTGGATTCTCATCCTTCTTAACTTTGTGAGACATATTCTCATATTTTTAAAGTCTGATTTATAGATCCTCTCCATTATTGCCTTTCTAGCTGCTTCATAAAGGTATGCCTTGCCTTTTTCAATAGTGCATTCCTAATTCTTATTGTTATAAACATACTCAAATATCTACTAATCACAGTGGCTCTATAACCAAGGAAACTTGAATTTGAATCCCTGGATGCCAATCAATTTCTTCTCTTTCTAAGTTTACCTTGCAATTTATTATGGTGTCTCAGTGTTTTACCAAGAGAAATGGACATTTTCTTACTTGGTAATAAATCTATAGAGTTTCTGCCAGCAAAAAATTATATGATATATGAGAAGTACTTACTAAATTATGTTCTGATGCAGGTCACCAGGACATTTTAGCCACTTGCATTGGGATTCTCTTTAGACAATAGATATTTCTAAATCTGCGGATTTTCGTATTTGCCTTTCATTTCATCTGTACATGGATTTAGTTCGATGTTTCAGGTATTTTAAAGCTATATTCAAAATATCATGATGCTGAGTCTCTCTTTTTTCCCCAG
Seq C2 exon
GAATTTTTTTTGCTAATGTCCATAAATGGAAGGAGCAAAGAAGATTTGCACTGACAATGCTCAAGAATTTTGGATTAGGGAAGAAGAGCTTAGAGCAATGCATACAGGAAGAGGCCCACCATCTTGTGGAGGTCATAGGAGAAGAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000030466:ENSRNOT00000089521:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.8=100)
A:
NA
C2:
PF0006717=p450=FE(10.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]