RnoINT0044547 @ rn6
Intron Retention
Gene
ENSRNOG00000004786 | Cyp4f1
Description
cytochrome P450, family 4, subfamily f, polypeptide 1 [Source:RGD Symbol;Acc:70926]
Coordinates
chr7:15185618-15188480:-
Coord C1 exon
chr7:15188336-15188480
Coord A exon
chr7:15185672-15188335
Coord C2 exon
chr7:15185618-15185671
Length
2664 bp
Sequences
Splice sites
5' ss Seq
CAGGTACCC
5' ss Score
8.63
3' ss Seq
GCTGTCCTTGTTCATGGCAGCTG
3' ss Score
7.71
Exon sequences
Seq C1 exon
GTCACTCCTACAGAGCAGGGCTTGAAGGAATTGACTCGGTTGGTGGGTACCTACCCCCAAGGCTTTTTGATGTGGATTGGGCCAATGGTCCCCGTTATTACTCTGTGCCACTCTGACATCGTCCGATCTATCCTCAATGCCTCAG
Seq A exon
GTACCCATGGAAGCTGGTGGTGGTGGGACTCTGAGGGCTTCCAGTCCCTTCTATGTGACTCTGGCAGTGGTCTAGTATCTCCTTTCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTCTTCTCTTCTCTTCATGGTTTCACCAGCTCCCACACAGCTCTCTTCCTCTACTATTACTTGCTACATGACTTCTACATCTCAGTACTCTGTACGTTCTGCATGCCCAGATGTCTTCAAGCCAAGGTCCTCTCCTAGAGGAAGTCAATTCTTGAGGTAGAAGGTTGACAGGGTCAGGGACATCCCTTGTGTGGTCAGGACCCTGACAGTTGAGTTGAGGGTGTGATCTCTGCTGGGATTCTGCAAAGGCTTCCTGGAAGGACTATTGCTTAAGCCATGTCTTTAGGTTTGAGTAGGAATGTTGAAGCCAGGGCCAGGTGGCCCAGTGTGCATCAGAAACGTCTAACGCTCAGACCTAGAACCAGAAAAACAAGCATTCCTATGCTCAGAGCAATGAGAGGACTTGTGGCTGTTAGAGAATCTGGTTTGTTATTTCTATATACCCAACTCCGAGTTCATCTTTCCACCCTGTTGGCCGGAAATCGCCTTTTGTTGATCTGTGTCTTGTCAGAGCCGAGAAATCCTCCCCATTGCAGCCTAGCTTCCTACTTTTGCATTCTTATCTTGGGATAGGCCAGGGTAAGAAGGGAAAGAGATGGATCACCACAGTTCGGTCATTTGTCAGGCATAGGTCTGACACTCATTGTTAGCTTCCGAATATGCAGGCTAGCTGACTCTCGAGGGGCAAGACAGAACCCTCTTGTAGCTGGCTCCTATCTTCTCTGGACTTACAGACATGTGCTGCCACATCCGGTTTGGAGGATTCATGCTTTGATTCTCAGGCTTATGCAACAAGTGCTTATGTCCACTGAGCACCTCCCTGGTCCAGACCATGCCACTTTCACGAAGCCCATGCATTTTACTCCACATGGACACTGTACTTGCTCCAGCTTGCCCACCACTGAGGTCTCTGTGATGCCTCCAGTTGATAATGCAATGTGAATCAGGCAGGCAGGCCGGGCTGTGGCAGTGACAATCCTATACCTTTCTCACATGGACATCCTCCGTCTCGTGTCTTATCATGCTGCCTGTGTTGCGAGCATAACTGTGCGGCACCACCTGTATGGTCACAGCTCTTGCAGGTTCGAATTTACATCTTCATCTCCTGTTTGCATTTATACTTGTGTCACCTGGGATTGCATGAAGGTAACCATGTCTGTGCTTAGCTGCACACATGAATATTTTGGGGCATGTCAAGTTCTGTGTGAGTCGGCCTTCCTATCTCGCTTTTCAAAGCTGGGCTTTCTTTGGGGGCTATCTGAGATTTAGGACCCAAGGTCCTTTTGAGAATTGATGAATCCCTTATCAGAGCCATACCTAAGGCAAGACTTTAAGAACATCCAGGTGGGACGTGGGTCACAGTCTAGGTCACATTTGGTGTATTAATGGAGCTTTTGTTTTCTGAAGACATTGTTTTGCATCTCAGTTGAAGCTAGCCCCAAATTCTGGATTTTTTTTAACCTCTGAAGTATTGGAAATTACAAGACCCACCATGCCTTAGTTACTTTTCTTTTCTTTTTTTAAAGATTTGTTTATTTTATGAGTACATGCTCAGACACACCAGAAGAGGGCATCAGATCCCATTACAGATGGCTGTGAGCCACCATGTGGTTGCTGGGAATTGAACTCAGGACCTCTGGAAGAGCAGTCAGTGTTCTTAACTGCTGAGCCCTCTCTCCAGCCCCTGAGTTACCTTTCTGTTGCTGTGATAAAACACCATGACAAAGGAAACTCATAGAGGAGGAATTTATTTTAGGGTTATGGTTTCAGAGAGACAGTCCACAATGGTAACAGAGTCTTGGTGAAGAGAGTAGGAAATTGAGAGATCATATATAATTTGGCCACAAACCAGAGCGGGAAGAACAATGGAGAAGTAGGGAGAGTCCGTGAACTTTCAAAACCTTCTCCAAGTGACGGATTTCCTTCAGCAACGCAACACCTACTAACTCTACCTAAACAGTGCCACCAGCTGGAGGACAAGTACTCAAACACATTCACCTGTGGGGGACACTCTCATTCAAACCACCATACACTCCCATTCTCAAATCCTGTGAGAGGCTTGTCTGAGGTTTACATGAGGTCTGACAGATAATCCGGATCATGTTACAGCATCCTGTCAGGGTGGCCATGCTATGCCATGCTAACCCTTATGCTTCATGTGATGTGTCCCGTATCCGTTCAGGAGATGTCAGATACCTAGGCTCCCTAGATGACATAGGTCTCCACAAATGCCACAGGGTTGTGATGGACATGGTTGTATGGCATGCATGTCAGACAGACTATGTACAAGCCATGTAAACGGCACCACAGCATAATGTGGTGTGTTAAGCTGTGACCCTGTCTTACCTGTTGACACTGCTGTTGCTTCGTCCTGTCTTTTCTTACCTCCGACTTCATCGTACTTCCTCTATCCTTGGCATGCGGACTTCCGGGAAGGAAGTGCAGACTTCCGGGAGGGGGTTCCCACCCACCTTCCACCATCCGTCCCCGCCTACACCATGACCCCTGGCTGTCCTTGTTCATGGCAG
Seq C2 exon
CTGCCGTTGCGCTCAAGGATGTGATATTCTACACCATCCTCAAGCCTTGGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004786:ENSRNOT00000006533:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.3=100)
A:
NA
C2:
PF0006717=p450=FE(3.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]