RnoINT0044617 @ rn6
Intron Retention
Gene
ENSRNOG00000043233 | Cyp4f6
Description
cytochrome P450, family 4, subfamily f, polypeptide 6 [Source:RGD Symbol;Acc:708365]
Coordinates
chr7:15199544-15199821:-
Coord C1 exon
chr7:15199757-15199821
Coord A exon
chr7:15199627-15199756
Coord C2 exon
chr7:15199544-15199626
Length
130 bp
Sequences
Splice sites
5' ss Seq
GAGGTGCGA
5' ss Score
5.51
3' ss Seq
TAGTCTTTCCTGGCGTACAGGTC
3' ss Score
5.43
Exon sequences
Seq C1 exon
GGAACATCTGTGTCATCAGCATCTTTGGGGTTCACCACAATCCTTCAGTGTGGCCAGACCCTGAG
Seq A exon
GTGCGACCCTACCCTTTCCCCAACTCTGGGACCCTGGGAGGAGGCACAAGCCTACACAGGAAACCAGAGCTACCATCCTGGAAATGGGGAAGAGACATGACACATTAGCCTAGTCTTTCCTGGCGTACAG
Seq C2 exon
GTCTACAACCCCTTCCGCTTTGACCCAGAAAACCCACAGAAGAGGTCACCTCTGGCTTTTATTCCCTTCTCAGCGGGACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000043233:ENSRNOT00000066095:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.036
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(4.5=100)
A:
NA
C2:
PF0006717=p450=FE(5.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAACATCTGTGTCATCAGCA
R:
TGGGTCCCGCTGAGAAGG
Band lengths:
147-277
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]