RnoINT0048656 @ rn6
Intron Retention
Gene
ENSRNOG00000005451 | Dnah11
Description
dynein, axonemal, heavy chain 11 [Source:RGD Symbol;Acc:621088]
Coordinates
chr6:146012988-146014285:-
Coord C1 exon
chr6:146014194-146014285
Coord A exon
chr6:146013115-146014193
Coord C2 exon
chr6:146012988-146013114
Length
1079 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
AAGGGTCTTTGTTCATGCAGGCT
3' ss Score
6.39
Exon sequences
Seq C1 exon
GAGTTAATGTTCAAGACAGCCAAGATAAAAAACGTCTTAGAAGCAACATGCAGACCCCACCTCTATGAGAAACTTAAAGATTTTCAGCACAG
Seq A exon
GTAAGAAAAGGAGCAGGGGGACCAGTTGACACATATTTCTTTCACATTCTAACGATGTTTAATCACATGTAATAGAAGTCGCTCTGTGCTCTCTGTAGTTGTCTTGTGAGTATTAGGTCAGGTTCCTGATAACTGATCAATTCTTTCATTACATCATCCTACACATACTGATTAAACACCTACTATGTGCCAAAAGCCAGGACAGCTCTCATTTGCTCATAGTCTTTTAGTCAGGGTATATGTGTATACATATATATATATATGTATATGTGTGTATGTATATATGTGTGTATATGTGTATGAATGTATATGTGTATATACATATATATAATAAGGTATATTCCAATTCATTTCCCCTTATCTCAATGATCATCTCATTCTTCTCCTCCTTTGTTATTTTTCAGTAGTTTTGATTCCAGAATATCATTGAACCCAAAGGGATCCTCCTGCCTCAGCTTTCCAAGTGCCACATTATGGAATGAGCTATGTGTATGCTTTATGCTTTGAACTATATATCACCCTTAAGGAATATCTCAATGCTTTCAAAATCTTTTCCCTAAGGGCTATTTGTAAAGTCACATTAACATATAATCCATAGGAACATTCGGGCTTTTGCTTTAAAATGAGCAAAACAACAATTTAGACAAGATGCTTCCTGATAGGATGTGGTTGTTACTATTTAGTCAATGGTTAGGAGTTTGGATGATAATGCAGCAGCAGTTCTGGATCTTATGGCTCCGCTGAATGCCAGAGAAGGTCAGAGTCACTTGTGTTTTACAGATATCCATTTGGGAAAGGGCTTTGCCCAGTTGTAGCTTTTCTACTGCGACTTATGCTTCAGATGAGCAATGTCAAATGGTAGTCTTCATCAGAAGCAATGAGTATCATAAACCCAAGTCTGGTGTATAATGGTGTGTGAGTGTATATGTCCCCTCAACTCCCATGACCCTGGCTGTAAGTAGGTGTTGAAGGTGGAGGAGGGAGCTATGAAAGAGCGAGCTTCCTGGTTGAACGGAGTCACGGTCGATGTCAGTGTCAGAAGCACAGGACTTGCTTAAGAAGGGTCTTTGTTCATGCAG
Seq C2 exon
GCTCTCTCTTTGTGAAAAAGCCCTGGCTGAGTACCTGGAAACCAAGCGGGTCACGTTCTCCCGCTTCTACTTCATCTCCTCCGCAGACTTGCTGGACCTTCTCTCCAAGGGAGCACAGCCGAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005451:ENSRNOT00000007233:27
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=FE(13.0=100)
A:
NA
C2:
PF083938=DHC_N2=FE(10.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTAATGTTCAAGACAGCCAAGA
R:
CTTCGGCTGTGCTCCCTTG
Band lengths:
215-1294
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]