GgaINT0129586 @ galGal3
Intron Retention
Gene
ENSGALG00000007106 | DNAH17
Description
NA
Coordinates
chr18:9749366-9749772:+
Coord C1 exon
chr18:9749366-9749457
Coord A exon
chr18:9749458-9749645
Coord C2 exon
chr18:9749646-9749772
Length
188 bp
Sequences
Splice sites
5' ss Seq
GAGGTGGGT
5' ss Score
7.07
3' ss Seq
CCCTCCTTGCTTCCTGCCAGGCT
3' ss Score
8.82
Exon sequences
Seq C1 exon
GAACTGATGGCCGACGCAGTGAAAACCCCCAATGTCATCGAAGCTACCAACAAACCCGGCCTCTTCAGCAAGCTGGAGGCACTGCAGAAGAG
Seq A exon
GTGGGTTTGGGTCATCTCATCCTGATGGAGCGTTGTGGAGGAACCCCCGCAGCCTGTCCTAAGGCCAAAGGAAGAGTTTGCTTTCCCCAGCAGCCAAAGTGTCATCTTATTTAGCATCGTTACAATTGCAAATGGTAAAGATGGGTACATTTTTGCAGCTATTTTTTTCCCTCCTTGCTTCCTGCCAG
Seq C2 exon
GCTGGCGGTCTGTGAGAAGGCTCTGGCCGAATACCTGGAGACAAAGCGACTGGCCTTCCCCAGGTTCTACTTCGTTTCCTCCGCGGATCTGCTTGACATTCTATCTAATGGGAACGAGCCAACTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007106:ENSGALT00000011513:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=FE(8.0=100)
A:
NA
C2:
PF083938=DHC_N2=FE(11.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACTGATGGCCGACGCAG
R:
CTCAGTTGGCTCGTTCCCATT
Band lengths:
219-407
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]