RnoINT0048793 @ rn6
Intron Retention
Gene
ENSRNOG00000003028 | Dnah17
Description
dynein, axonemal, heavy chain 17 [Source:RGD Symbol;Acc:1563805]
Coordinates
chr10:107101965-107102474:-
Coord C1 exon
chr10:107102383-107102474
Coord A exon
chr10:107102092-107102382
Coord C2 exon
chr10:107101965-107102091
Length
291 bp
Sequences
Splice sites
5' ss Seq
GAGGTGGGT
5' ss Score
7.07
3' ss Seq
CTTCCCCTCCTTCCCCTTAGCTT
3' ss Score
10.47
Exon sequences
Seq C1 exon
GCCCTGATGGAGGATGCTGTGAAAACACCAAACGTGGTGGAAGCCACCAACAAGCCGGGCCTCTACGACAAACTAGAGAGGCTGAAGAAGAG
Seq A exon
GTGGGTCCTCACCCCATCGGTCCAGCTGAGGCGTTGACAGGGCAGGTCATGCGCCACCTGCTGTGCAAAGTCACAGGTTACAGGCTAATAATATTCCATCCCTGAGGTGGATTAGGACACACCCACACACATCCCTGTGTGATCGGAGGTGGTTGGTGGAGGATGGGGACATCTGGAGACCAATTGGGTCTGTGGAGAAAAACTAGATGCCCTCAGTAAGCTTAGAGCATGGACTGGCCAAGAGCCCTACAGAGAAGGACCCACCAGTCCCCTTCCCCTCCTTCCCCTTAG
Seq C2 exon
CTTGGCTGTGTGTGAAAAGGCGTTGGCTGAATATCTGGAGACCAAGAGGCTGGCGTTCCCACGGTTCTACTTCGTCTCCTCCGCTGACCTGCTGGACATTCTCTCCAACGGAAACGATCCCGTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003028:ENSRNOT00000004035:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=FE(7.2=100)
A:
NA
C2:
PF083938=DHC_N2=FE(10.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTGATGGAGGATGCTGTGA
R:
GGGATCGTTTCCGTTGGAGAG
Band lengths:
212-503
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]