HsaINT0049532 @ hg19
Intron Retention
Gene
ENSG00000187775 | DNAH17
Description
dynein, axonemal, heavy chain 17 [Source:HGNC Symbol;Acc:2946]
Coordinates
chr17:76502802-76503451:-
Coord C1 exon
chr17:76503360-76503451
Coord A exon
chr17:76502929-76503359
Coord C2 exon
chr17:76502802-76502928
Length
431 bp
Sequences
Splice sites
5' ss Seq
GAGGTGCGG
5' ss Score
6.79
3' ss Seq
ACTTCCTTCCTTCCTCCCAGCTT
3' ss Score
9.21
Exon sequences
Seq C1 exon
GCCTTGATGGAAGATGCAGTGAAAACACCCAACGTGGTGGAAGCCACCAGCAAACCCGGCCTCTACAATAAACTGGAGGCCCTGAAGAAGAG
Seq A exon
GTGCGGCTCACACCTATCCAGACCAGGGGAGTCAGTGGTGCAGATTCCCTAAGTCTTAAGTCTGACGGAACTTAAGTCTTGTGCAGCCTGCTGGCCAGGACAGGGCAAAACCATGGGTCCTGGGTTAATCAATTGCCTTTCCCTGGGGAGCACACACTCCCCGGCCTCATCCCACCACGTGATGCCTTGGCCTTGAAGGAAGCAATGACCCGGAGAATAAATGATGCTCCCTCTTGCCTAGGAGTGCCCACAAGGTCAGGGGATGGCAAAGAAACGAGAGCCTCCGGTAGGAGATTCTGAATTAAACCAGGCCTGTGAACAGCAGTCCAGGCATCTCCAGGATGATCAGTTTCCTTCGCCGACAGGGTGGGTGGCAGACATCCCTACAGAGTAGGGTCACCGGCCTCCTCTACTTCCTTCCTTCCTCCCAG
Seq C2 exon
CTTGGCCATCTGTGAAAAGGCTTTGGCAGAGTATTTAGAGACGAAAAGACTGGCTTTCCCCCGGTTCTATTTTGTCTCCTCGGCTGACCTCCTGGACATTCTCTCCAATGGCAATGACCCCGTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187775-DNAH17:NM_173628:29
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=FE(7.2=100)
A:
NA
C2:
PF083938=DHC_N2=FE(10.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTTGATGGAAGATGCAGTGA
R:
CGGGGTCATTGCCATTGGAG
Band lengths:
214-645
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)