BtaINT0050342 @ bosTau6
Intron Retention
Gene
ENSBTAG00000000920 | DNAH17
Description
dynein, axonemal, heavy chain 17 [Source:HGNC Symbol;Acc:HGNC:2946]
Coordinates
chr19:54350537-54351160:+
Coord C1 exon
chr19:54350537-54350628
Coord A exon
chr19:54350629-54351033
Coord C2 exon
chr19:54351034-54351160
Length
405 bp
Sequences
Splice sites
5' ss Seq
GAGGTGGGT
5' ss Score
7.07
3' ss Seq
GCCTCGTTCCCTGCCCCCAGGTT
3' ss Score
11.63
Exon sequences
Seq C1 exon
GCCCTGATGGAAGACGCAGTGAAAACACCCAATGTGGTTGAAGCCACCAACAAACCTGGCCTCTATGACAAACTTGAGGACCTGAAGAAGAG
Seq A exon
GTGGGTCCCATACCTGTCCAGACAAGGGGCTTCACCGTGGCAGAAACCCGAGTCATGTGCCTTCCCCGCTACCCCGCTGGCCAGGCCAGGAAAGCCCCAGGTTGTGGGTTAACACATCCCCTCCCTGGAAGCACCTGCCACTTCCTGCCACCCTAGCCACAGAGACTGCTTTGGCCTCAGAGGAAGGCACGATGGCAGAGATTCAACTGTAGCCCCTCCTGCCTGGCGACGTCCACAAGTGCGGGGGCTGGCTGAGAAAGAGCGTGTCCGCTTGGAAGATTTGAATCAAACTGGGGCTGGGAACGGCCTGAGCGTCTCCAGGGTCGTCTGTCCAGTGCGTGGAAGGATGGGCTGGCAGAGACCTTCTGTCGAGCAGGACTCAGCAGCCTCGTTCCCTGCCCCCAG
Seq C2 exon
GTTGGCTGTGTGCGAAAAGGCCTTGGCCGAATATTTAGAGACAAAAAGACTGGCTTTCCCCAGGTTCTACTTTGTCTCTTCAGCTGACCTCCTGGACATTCTTTCCAACGGAAATGACCCCGTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000920:ENSBTAT00000022637:28
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=FE(7.2=100)
A:
NA
C2:
PF083938=DHC_N2=FE(10.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCTGATGGAAGACGCAG
R:
CGGGGTCATTTCCGTTGGAA
Band lengths:
214-619
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development