MmuINT0050748 @ mm9
Intron Retention
Gene
ENSMUSG00000033987 | Dnahc17
Description
dynein, axonemal, heavy chain 17 [Source:MGI Symbol;Acc:MGI:1917176]
Coordinates
chr11:117955408-117955910:-
Coord C1 exon
chr11:117955819-117955910
Coord A exon
chr11:117955535-117955818
Coord C2 exon
chr11:117955408-117955534
Length
284 bp
Sequences
Splice sites
5' ss Seq
GAGGTGGGT
5' ss Score
7.07
3' ss Seq
CTTCCTCTCCTTCCCCTTAGCTT
3' ss Score
10.89
Exon sequences
Seq C1 exon
GCTTTGATGGAGGATGCTGTGAAGACACCAAACGTGGTGGAAGCCACAAACAAACCGGATCTCTATAACAAACTGGAGAACCTGAAGATGAG
Seq A exon
GTGGGTCTCCATCCCATATGTCCAGTTGAGGTGTTGATGGGACAGGTCATGTGCCACCTGCTGTGCAAAGGCACAGGTCACAGGCTAATAATATTCCATCCCTGAGATGGATTAGGACACACACTGTGTGATCAGAGCTGGTGGAGGACAGGGGCATCTGGAGACGAATAGGGTCTGTGGAGAAAAACTAGATGCTTTCAGTAAGCCAAGGGCATGGGCTGGCCAAGAGCCCTACAGTAAAGGACCCACCAGTCCCTTCCCTCCCTTCCTCTCCTTCCCCTTAG
Seq C2 exon
CTTGGCTGTGTGTGAAAAGGCGCTGGCTGAATATCTGGAGACCAAGAGGCTGGCGTTCCCACGGTTCTATTTTGTCTCCTCCGCCGATCTGCTTGATATTCTCTCCAACGGAAACGACCCCGTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033987-Dnahc17:NM_001167746:29
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=FE(7.2=100)
A:
NA
C2:
PF083938=DHC_N2=FE(10.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTTGATGGAGGATGCTGTGA
R:
GGGTCGTTTCCGTTGGAGAGA
Band lengths:
212-496
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: