RnoINT0048800 @ rn6
Intron Retention
Gene
ENSRNOG00000003028 | Dnah17
Description
dynein, axonemal, heavy chain 17 [Source:RGD Symbol;Acc:1563805]
Coordinates
chr10:107095651-107096713:-
Coord C1 exon
chr10:107096557-107096713
Coord A exon
chr10:107095756-107096556
Coord C2 exon
chr10:107095651-107095755
Length
801 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGT
5' ss Score
9.79
3' ss Seq
ATCCGCCTTTCCCTTTGTAGTCC
3' ss Score
10.41
Exon sequences
Seq C1 exon
GTGCTACATCACACTCACACAGTCCCTCCACCTGATCATGGGCGGAGCCCCTGCAGGCCCTGCTGGCACGGGCAAGACGGAGACAACCAAGGACCTGGGCAGAGCCCTAGGCACCATGGTGTACGTCTTCAACTGCTCTGAGCAGATGGACTACAAG
Seq A exon
GTATGTGGCCAGGGCTACGAGTCCCCGTCTGGGACCCAAGAGCGTGTGCACCCTACAAACAGAGCCCTACAGGGCAGCGACTAGGCATCCAGAGTACCTTGTTAGCACCCCCTTGTGGAGGTAGAGGTCTCAGCAGTTCCAAGATTGTCCCCGAGGATTAGAGACCCAGAGAGGAGTGAGTAGCACTTGTTCAGTGTAGGGTTAGGGTGAAAGTAGTGGACAGGTAAACTAACTCAGAAGGGGATGAGGACAAGTCCATCAGCTGCAGGGTCACGTCTGCTCAGAGGACTAAACAGGAAGGGAGGTACTCCAGCAGTAACAGTCCCAGCATAAGAGGGAGGAGTGGGGATGCCCTCAGTCTGTAGGGGACTCCCTCTTGTTGGATGAGCCCCACAGCCTAGCAGTTCCATCCCGAGGCTGAGGGCAGTGCCCAAAACCAAAGGTCATACCAGCATGCCCCTGTCATGGGCCCTGAGAAAAGTGAAGTCCTTGGTCCCTGTGTGGGCTCCATGGGTCTGTTGCTGACCCTGCAGGGGATAGAATGGCACATTCACAGGGAAAAGTCCTCCAGGACCTTGCAGCCCCAGCCCACCTGGGAGGATCCCCTCCTTCATGTGCATAAAATGAGAAGGTGTGGGTGGGGTGGGATTGGGGGATTTCTTAGCCTGCTTCTGCCAGATCTTCACTTACAGAAGCACTGGCACTCTGTGGGGTCAGCCCTTGGGTGCTGTCTCCAGGCACCTGCTCCTTGCAGGCCTTTGGGGGCCACTCCCTCTCTCTGATCCGCCTTTCCCTTTGTAG
Seq C2 exon
TCCTGTGGAAACATCTACAAGGGTCTGGCACAGACAGGAGCCTGGGGTTGCTTTGATGAGTTTAACCGGATCTCAGTGGAGGTCTTGTCTGTGATTGCTGTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003028:ENSRNOT00000004035:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.075 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=FE(22.5=100)
A:
NA
C2:
PF127742=AAA_6=FE(14.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCTACATCACACTCACACAGT
R:
CTGTACAGCAATCACAGACAAGAC
Band lengths:
262-1063
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]