GgaINT0129595 @ galGal3
Intron Retention
Gene
ENSGALG00000007106 | DNAH17
Description
NA
Coordinates
chr18:9752410-9752964:+
Coord C1 exon
chr18:9752410-9752566
Coord A exon
chr18:9752567-9752859
Coord C2 exon
chr18:9752860-9752964
Length
293 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGG
5' ss Score
8.76
3' ss Seq
CCCTTTGCTTTGCTCTCCAGTCC
3' ss Score
9.14
Exon sequences
Seq C1 exon
GTGCTACATCACCCTGACGCAGTCCCTGCATCTCTTCATGGGAGGGGCCCCTGCTGGCCCTGCAGGCACCGGGAAAACAGAGACCACCAAGGACCTGGGCCGGGCAGTGGGCATGATGGTCTACGTCTTCAACTGCTCCGAGCAGATGGACTATAAG
Seq A exon
GTAGGGGGGTGGGGCTCGGAGAGAGCCCTCATGTGCACCACTGCCTGTGCTGCAGTTCCCACAGCCGTGCCCTGAAATGGTGCCGGGACCTCGCTCTGCTCTCCCAGACCCACGAGAGCTGTGGGGTCAGGCAGCAGCTGCTGGGAGCCGGGGGCTGCCGCATTGATGCTCACCGCTTCCCGAGGGAGCAGCTCCCAGCTCCAAACAGGAGCAGCTCTCGGCAGCACGCTCTGCAGCTGATGCTTGGGGCGCTCGGTGCTTCTGAAGCCTCTTCCCTTTGCTTTGCTCTCCAG
Seq C2 exon
TCCTGCGGCAATATCTATAAGGGGCTCGCTCAGACCGGAGCCTGGGGCTGCTTCGACGAGTTCAATCGCATCGCGGTGGAGGTGCTGTCAGTGATTGCAGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007106:ENSGALT00000011513:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.094 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=FE(22.5=100)
A:
NA
C2:
PF127742=AAA_6=FE(14.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCTACATCACCCTGACGC
R:
GCACTGCAATCACTGACAGCA
Band lengths:
260-553
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]