HsaINT1011404 @ hg38
Intron Retention
Gene
ENSG00000187775 | DNAH17
Description
dynein axonemal heavy chain 17 [Source:HGNC Symbol;Acc:HGNC:2946]
Coordinates
chr17:78499008-78500461:-
Coord C1 exon
chr17:78500305-78500461
Coord A exon
chr17:78499113-78500304
Coord C2 exon
chr17:78499008-78499112
Length
1192 bp
Sequences
Splice sites
5' ss Seq
AAGGTACGC
5' ss Score
10.4
3' ss Seq
CTCCATCTCGCCCTTTCCAGTCC
3' ss Score
8.6
Exon sequences
Seq C1 exon
GTGCTATATCACCCTGACCCAGTCCCTCCATCTCATCATGGGTGGAGCCCCTGCCGGCCCCGCTGGGACCGGCAAGACTGAGACGACCAAGGACCTGGGCAGAGCCCTGGGCACCATGGTCTACGTCTTCAACTGCTCCGAGCAGATGGACTACAAG
Seq A exon
GTACGCGGCCGGGGTCCGGAGGAGGGACCCAGAGTCTTCTTTTATAGAAGCAGATCCTAGCACCCTGTCCTCCGAGGCCCCACAGTAAACTCCAGATCTCTGGATACCTGTGAATGGCACTGGAGAGGAGGTGCCAGGGCCCCCACTTGCTGGTAGCATCCCCCTCAGGTGGTCCCTCTGGAAAGACTTCCAGGGTGGACAGACGCAGCCCCAAATGTCCTGCCCCAGCCCCTGCCCTGGAGGTGACCCTCTCTCAATTTCAGTTGTTAAGATTGCCCCGAACTGGGGACTCCGCACAGGGGTGAGCACCTCCCTCATGGTTCAGCATGGGGTGGGGTACAAGCAGTGTCCAGGTGGGTTTGGGAGGGGAGCAGGGGATTGGCCCGGTCCCATCAGTCATTAGAGCCTGCACAGGACATCGTCGGCTCACAGGAGGCCAGGGAGGGGAAGGGGATACCTCGGAGCTCCAGGCTGCAGCAGCCTCTTGCAAGACGGGAAGGCAAGGGGGATGGAACCCTGAGTTTTGGACCCTAGGCCTGCAGAGGGTCTCCCCTCCCCAGCTTGGATCTGAGCCCCACAATCTGGGGGCCCCCTCCTGAGGCTGAGGATGGGACCAGCAGCCCATGTTCACTGTCAGGGCCACGCAGTCCACATCCGCCTCCTGGATTTTAGAAAAGTGAAATCTGAAGTTGGATCTCCCTGGAAGGGACTTAACATCCACCTGGAATCCCAGGTGTAGATGGGACGAGTCCTTCTGATTGGCCCAGGTGGGGCCTAGAGAGACACAGATGTCTTGAGGGAAAGCCTCCGGCCTGCTAGACGTGCCCCCATCCCGCCTTAGAGGACTCCCTCTCCTCTCCACGCAAGAAAGAAAAGGGCTGAGAAAACATGCAAGGTTTAGAACTTAAATGTGCTTGTCTGAGCCCCTTATTAGGGACTCCAGGAAGTCCCCATCCTGGGGTCTGGGAGGCAAGGGTGAAAGGATGGCTCTTCCTCGTGTCCAGCCCTCCACGGTGTTACCCTGGGCAGTAAGCTGACCTGCCTGCTGGCCTGCGGAAGGCTCCAATGCACCGGGGCCTGAGCAAGCTTTGGGAAGAGAAAACACAGCCGAAGAGGCAGGGGGAGGCCCCTGCAGCGCCCGCCCTCCCTGTCACCCTCCCAGCTCTTCCTTTCTCCATCTCGCCCTTTCCAG
Seq C2 exon
TCCTGTGGAAATATCTACAAGGGCCTGGCCCAGACGGGAGCCTGGGGCTGCTTTGACGAGTTTAATCGCATCTCAGTGGAAGTCTTGTCTGTGATTGCCGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187775:ENST00000585328:36
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.099 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=FE(22.5=100)
A:
NA
C2:
PF127742=AAA_6=FE(14.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCTATATCACCCTGACCCAG
R:
CTGCACGGCAATCACAGACAA
Band lengths:
262-1454
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains