BtaINT0050350 @ bosTau6
Intron Retention
Gene
ENSBTAG00000000920 | DNAH17
Description
dynein, axonemal, heavy chain 17 [Source:HGNC Symbol;Acc:HGNC:2946]
Coordinates
chr19:54355435-54356708:+
Coord C1 exon
chr19:54355435-54355591
Coord A exon
chr19:54355592-54356603
Coord C2 exon
chr19:54356604-54356708
Length
1012 bp
Sequences
Splice sites
5' ss Seq
AAGGTACCC
5' ss Score
9.16
3' ss Seq
CTCCCCGCCACCTTTCCTAGTCC
3' ss Score
6.77
Exon sequences
Seq C1 exon
ATGCTACATAACCTTGACCCAGTCCCTCCATCTGATCATGGGCGGAGCTCCTGCTGGCCCCGCCGGGACTGGCAAGACCGAGACGACCAAGGACCTGGGCAGAGCCCTGGGCACCATGGTGTACGTCTTCAACTGCTCCGAGCAGATGGACTACAAG
Seq A exon
GTACCCACCCCACGTCCAGGGGACCTGGAGTCCCCTCCCCCAGGAGGCCGCAGCCAACACTCCCCAAGTGACCGCTGGATGGGTGGACACTGCTGGCTGGCCTCTTGGGCATGACCAGCGTGTCTGGTGGAGGATCCCAGGGTGGACAAGCTGCTGCTGCTGCTGCTAAGTCGCTTCAGTCGTGTCCAACTCTGTGCGACCCCAGAGATGGAACACCCGGCTCCAAACATCCTTCCCTGCTAGGGAGGCAACCCCTCCCAACCTACATCCCAAGCTTGTCCCAGCAACTGGGGGTACCAGAGAGAGTGAGAGCCTCCGAGGGGGCAGGGTGTGGGGGGTGGCCCCTGCGGAGGGGCCAGGTCCCTGCGGTCAAAGGCTTTGTGGCACAGCCACAGTTCTTAAAGGGCCCAGGAAAGAAGACCGTGGAGGTCAGGTCAAAGCAGCCTCTGGTGCGAAGGGTTGGGAGCCACTGAGGTCATGAACATGGCCTCCTGGGGCCTCCCCGCCCCATCCCCATGGGATCCCCACAGTCCAGGAGACCCCATCTTGAGGCTGAGGGTGGGGACAGCTGCCCCCTCTGACGGTGAAGGCCACAGCCCACACCAACCTCCTGGGTTTTAGAGAAGTGAAATCTGAAGCTGGATCCTCCTAGAAGGAATCCTGTGTGTAAACACTGAAGAATCATCCCTTTTATCTTTCAAGGGCCTGAGTCCATCTCCTCCACCTTAGAGGGAAGGCCCCTCCTTGTGTGCTAGTGGAAAATGCCAGGGTGAATTTTACACAAACGGCCTTATCTGAGTCCAGGCAAAGCCTTCAGTGCAGGGAGGACCTGGGCTCTTCCTGGCACCCGGCCCCATGTTGACTCTTCCAGGGAGGGGACGGCCTGCCTCTAGCCTCCCGGGGACCCCAAAGTTCCCAAGCCTGACCCCCAACCTGGGCAGGAGCTGACAGGGCAAGCGGGGGCCCCTGGAAGGACTCCCCAGTGCCCACTTCTCCCCGCCACCTTTCCTAG
Seq C2 exon
TCCTGCGGAAACATCTACAAGGGCCTGGCCCAGACCGGAGCCTGGGGCTGCTTTGACGAGTTTAATCGGATCTCTGTGGAGGTCTTGTCCGTGATTGCTGTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000920:ENSBTAT00000022637:35
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.094 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=FE(22.5=100)
A:
NA
C2:
PF127742=AAA_6=FE(14.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCTACATAACCTTGACCCAGT
R:
CTGTACAGCAATCACGGACAAGA
Band lengths:
262-1274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development