DreINT0058308 @ danRer10
Intron Retention
Gene
ENSDARG00000062630 | dnah9l
Description
dynein, axonemal, heavy polypeptide 9 like [Source:ZFIN;Acc:ZDB-GENE-050506-1]
Coordinates
chr6:10421713-10422099:-
Coord C1 exon
chr6:10421943-10422099
Coord A exon
chr6:10421859-10421942
Coord C2 exon
chr6:10421713-10421858
Length
84 bp
Sequences
Splice sites
5' ss Seq
AAGGTGTGT
5' ss Score
6.64
3' ss Seq
TATCTTCCTGCTCCTTTCAGTCC
3' ss Score
9.53
Exon sequences
Seq C1 exon
ATGTTACATTACTCTGACTCAGTCTTTGCACCTTACCATGAGTGGCGCCACCTCTGGTCCTGCTGGAACTGGCAAGACGGAAACCACAAAAGACCTTGGCCGCTCGCTTGGCATTATGGTCTATGTGTTCAACTGCTCAGAGCAAATGGACTACAAG
Seq A exon
GTGTGTAAATCCCAAGAGTTGTAGAAACAGCCCCTCTTTTTACTTGCTGCATCACTTCTTTCTTTATCTTCCTGCTCCTTTCAG
Seq C2 exon
TCCATAGGTAATATCTATAAAGGTTTAGCCCAGACCGGAGTGTGGGGCTGTTTTGATGAGTTTAACAGGATCTCTGTGGAGGTTTTGTCTGTGGTTGCTGTGCAGGTGAAAACCATTCAAGATGCTGTTCGCAACAAGAAACAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062630:ENSDART00000150908:26
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.151 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=FE(22.5=100)
A:
NA
C2:
PF127742=AAA_6=FE(20.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCGCTTGGCATTATGGTCT
R:
ATGGTTTTCACCTGCACAGCA
Band lengths:
172-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]