MmuINT0050673 @ mm9
Intron Retention
Gene
ENSMUSG00000018581 | Dnahc11
Description
dynein, axonemal, heavy chain 11 [Source:MGI Symbol;Acc:MGI:1100864]
Coordinates
chr12:119298213-119298923:-
Coord C1 exon
chr12:119298767-119298923
Coord A exon
chr12:119298359-119298766
Coord C2 exon
chr12:119298213-119298358
Length
408 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
3' ss Seq
ACTCTACCACCTCCTTGTAGTCC
3' ss Score
6.79
Exon sequences
Seq C1 exon
GTGTTACATCACTTTAACTCAATCACTTCATCTGACCATGAGCGGCGCTCCGGCTGGCCCAGCTGGAACAGGGAAAACGGAAACCACCAAAGACCTTGGCCGTGCCCTGGGCATGATGGTTTACGTATTCAACTGCTCAGAGCAAATGGACTACAGG
Seq A exon
GTAAGTTATTAAATGCATAAAATATGTTCCAGCCACATGAATCCCACTTGGAGAGAGCCATATACCTTGTCTGAAATGCTCAGAGCCATGAAGTATTTCTCACTTCTGAATTTTTCAGGTTTTTCTATATTTTCATCTTCGTGATAGTGTAGGCCTGCAGTCCAAGTCTGACCATGCAGTTCATTTGTATTACATGTACATCTACTGTGACTTAAGGTGACTTTACTCAGTAGGTTTAGTCATTTTGTGAAGCAAAACTTAACAACATGGGGATTCTTCCACGTGTGATGTCGTGTTGGTACCCAGTGCTCTGGATCCTGGAGCACTTTGGTTTTTAAGATCAGAGCTGTCCCACCTGTCAGTGTCCCAGACCCTCTGTTCCACTCTGACTCTACCACCTCCTTGTAG
Seq C2 exon
TCCATAGGAAACATCTATAAAGGACTGGTGCAGACGGGAGCATGGGGCTGCTTTGATGAGTTCAACCGCATCGCTGTGGAGGTTCTGTCTGTAGTGGCAGTGCAGGTGAAGATGATTCATGACGCCATCAGGAACGGGAGAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000018581-Dnahc11:NM_010060:33
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.151 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=FE(22.5=100)
A:
NA
C2:
PF127742=AAA_6=FE(20.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTACATCACTTTAACTCAATCACT
R:
CTCTTTCTCCCGTTCCTGATGG
Band lengths:
302-710
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: