RnoINT0048664 @ rn6
Intron Retention
Gene
ENSRNOG00000005451 | Dnah11
Description
dynein, axonemal, heavy chain 11 [Source:RGD Symbol;Acc:621088]
Coordinates
chr6:145970732-145971446:-
Coord C1 exon
chr6:145971290-145971446
Coord A exon
chr6:145970878-145971289
Coord C2 exon
chr6:145970732-145970877
Length
412 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
3' ss Seq
ACCGTGATACCTCCTTGTAGTCC
3' ss Score
6.57
Exon sequences
Seq C1 exon
GTGTTACATCACTTTAACTCAATCACTTCATCTGACCATGAGCGGCGCTCCAGCTGGCCCAGCTGGAACGGGGAAAACGGAAACCACCAAAGACCTTGGCCGTGCCTTGGGCATGATGGTTTACGTATTCAACTGCTCAGAACAAATGGACTACAGG
Seq A exon
GTAAGTTATTAAATGCATAAAATGTGTTCTAGACACATGAATCCTACTTGAAGGGAGCCATACACCTTGTCTGAAATGCTTGGGGCCATGAAGTATTTCTCATTTCTGAAATTGTCAGATTTTGCTACATTTCCATCTTCACGGTGGTATATGTCTGCAGCCCAAGTCTGAACATGCAATTTGTCTGTACTACGTGTGCATCTACTGCAGGTTTAAGGAGACTTTACTCAATAGGCTTAGTTGTTTTGTGTATAGAACAAAATTTCATGACATGGAGATGTTTCCATTTGTGATGTCATGTTGGCACCCAATGCTCTGGATTCTGGAGCACTTTGGTTTTTAGATCAGGGCTACCCCGCCTTTAAGCATTCCAAACCCTCTGTTCCACTCTGACCGTGATACCTCCTTGTAG
Seq C2 exon
TCCATAGGCAACATCTATAAAGGACTGGTGCAGACAGGAGCGTGGGGCTGCTTTGATGAGTTCAACCGCATTGCTGTGGAGGTTCTGTCCGTGGTGGCAGTGCAGGTGAAGATGATTCATGACGCCATCAGGAGCAGGAGAAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005451:ENSRNOT00000007233:40
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.151 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=FE(22.5=100)
A:
NA
C2:
PF127742=AAA_6=FE(20.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTTACATCACTTTAACTCAATCAC
R:
TCCTTCTCCTGCTCCTGATGG
Band lengths:
302-714
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]