GgaINT0127358 @ galGal4
Intron Retention
Gene
ENSGALG00000001111 | DNAH9
Description
dynein, axonemal, heavy chain 9 [Source:HGNC Symbol;Acc:HGNC:2953]
Coordinates
chr18:1069620-1070675:+
Coord C1 exon
chr18:1069620-1069776
Coord A exon
chr18:1069777-1070570
Coord C2 exon
chr18:1070571-1070675
Length
794 bp
Sequences
Splice sites
5' ss Seq
AAGGTACTG
5' ss Score
8.56
3' ss Seq
TTTATTTTTGTATCTTTCAGTCT
3' ss Score
9.68
Exon sequences
Seq C1 exon
ATGTTACATCACCCTGACCCAGTCTCTGCATCTGACCATGAGCGGAGCACCTGCGGGCCCTGCAGGCACCGGCAAGACGGAGACTACGAAAGACTTGGGGCGAGCCCTGGGCATCATGGTGTATGTGTTTAACTGCTCTGAGCAGATGGACTACAAG
Seq A exon
GTACTGCAGCACCTGCACCTCAGCCTGGGGATGCCTGGTGAAACCTCACGTAATCCCTCTGAGATCACTGCCATCCACCACCTCGCTCTGCTCCTTTCTGTTGCACTCCATGTCCTCCTCCTCCCTTTTCTAAGACTTGCACGTGGTTCTTTGAAAGGCAGAGAACCAAACCCCTCTCTCTGCCTCATTACACCTTTCCCTTTCCTTCTGGCATTAGTTTTGCATGTGAAATGCTTGAAAAATCTGTGTTAATTCTTCAGCTCTTGTCGTTTCTCCCCGCCGTGCTCATGGGCTGATGTGCCCTGCCAGGGATGGCTCCTGCCCTGCTTTTTTCAGGGTTCTCTGCCAAATAAAGGCAAAGCCTGCTGAACCTTCCATCACTGCAGAAGGTTGAATCATCAGGTCGAGCTTTGCTCCCTGCCACTTTGGCACGGTACAATGATTTGGTAGCCTTAGATCATATTTTATTCAGCTTATGGGCTCTCCCAGGAAGCAGAGCCATAAGTAATTCAGCACAGGTGACCTTTAAATCAAACCAGTGCACGGATGGATCAAGAAAGTGCAATTAGCAAATCAAGTGGCAAACAGCGCGGAGCTATAAATATTATAATTGAGTTGTGCCTGCTGCTTCCATGCACTTTTCTAAATACCCACAATAGGCTGTAAACTGCTAAAAATAAACAGACTGGGAAAGAAAATAAGAATCTCTTTTTTTTTTTTCTTTTTGGGGTTGATTCCGTTCCTAACGTCACTGCTGTAATTTTGTCATCCTGCTTTATTTTTGTATCTTTCAG
Seq C2 exon
TCTTGTGGGAATATTTACAAAGGCCTTTCCCAGACGGGAGCCTGGGGCTGTTTTGATGAGTTTAACAGGATCTCAGTTGAGGTCCTTTCTGTGGTGGCTGTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001111:ENSGALT00000001676:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.151 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=FE(22.5=100)
A:
NA
C2:
PF127742=AAA_6=FE(14.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTTACATCACCCTGACCCAG
R:
CTGTACAGCCACCACAGAAAGG
Band lengths:
262-1056
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]