RnoINT0049252 @ rn6
Intron Retention
Gene
ENSRNOG00000004171 | Dnah9
Description
dynein, axonemal, heavy chain 9 [Source:RGD Symbol;Acc:621799]
Coordinates
chr10:52572986-52580845:-
Coord C1 exon
chr10:52580689-52580845
Coord A exon
chr10:52573091-52580688
Coord C2 exon
chr10:52572986-52573090
Length
7598 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
3' ss Seq
CTTTATATGTTTCCTTGCAGTCC
3' ss Score
10.23
Exon sequences
Seq C1 exon
GTGCTACATCACTCTCACTCAGTCTCTACACTTGACCATGAGTGGGGCTCCAGCCGGACCTGCAGGCACAGGCAAGACAGAGACCACCAAGGACCTGGGCCGAGCACTGGGCATCATGGTCTATGTGTTTAACTGTTCCGAGCAGATGGACTACAAG
Seq A exon
GTAAGCACTTGCTTGTCTTCTGGAGAGACTGACATTTGGGTGGCAGATCAGATCAGGTGCTTGGTTTATCTGTATTTTTATTTCCCTTCTATCCCAGGAGATACAGAACCCAGACAGGAGGTTTCTTCTTCCTCTTTCACAGTAGACTTAAGGTCACTTTAACCCTTATTGGCCTCCTGTCAACCTCTTAGGTAATCAAGAGGCACAGCCTGTTACATCCTGACTCCACTGATGAACTTTGTAAACAAATAGATTATTTGACAAAGTGGCCTTTCTCTTGTCACCTATAAAATGACGATACTAAACAACTCCCCCCTCCCGCCAAAGTCCTAAATTTACTGTCGGGTGAAAGGGCAGAGAGACTCACGAGTAGCTAAGATGAAAACACTGGCTCCAGGTCATGGTTTTATGTGCTCTCTTCTGTAAAAAGGGGCATTCTCCTAGGATATTATGCAAAGGCAGATGAGAATCCTGTAACCAGAAGAGATCAGCCACTACTCTCTGCAGGAGAGGCCTGCCAACAGGCAGTGCAAAGACAGTGTACTTCATCCCCAAACCCAGCACTTTTCAAACAATGAATGTGTTCCAGGTTGTATCCTGGAGAAAAGCCAGAGAAACAAAAGGCCCACAAGGTCACTTTCAAATAGAGACATTCTACTCGCAAACGAATAAAAACTCATTTTAAAGATACGTAATGACAGTTTGCCCTGCTGCCTCTAGATAGGGTTTTCTCATACTGTATGTTTTTAATAAGATACCTTATGATTCTCTTGTAACAGATAATGTGAAAGTTTCAGAGTAGAAAAAAATGATGTGAATTAGATCAAATAAAATTTCATGTTTGAAAATACACTTAGTGTAGAAATAATTTTAGAGACTGCAGTTACTAAACCATGACCCTTTAGACAACACTCATTTTTCAGAACTGGGATAGTTAACTTTAGTACATACCCCTTCTGTGTACAGAGTCCTGGGAAGCCACGTTTTCTCATAGCAAATAAACAGAAGGGGCATCCAGACCTGCATCCAATCCTTCCCTGAGCCATCGCCTCTAAATTTGAGCGCAGCTGTTTTTATTGATGAATACATTAAGATAATGTTTCTTTTCAAGGCTGCAAGAAGATTTTCTTTTCCTCTTTAAAGAAATAAGCTCAGCTTTAAGGATTATTTTGAGCTTTTAGATTCTTCTGTAGTTAATTATTGGCAGGATTGCTGATATAAGTAAATCTCCCAAGGGGAACATTGTGGAAGACACACTCATTTGAACGTAGAAGGCGTGTGTTTTCATGGCAGAAAATCAGCAGATTTCTTCAAAGTCAAATCAAGCACAGCAAACAGAAAGAGTTGACTCCACAGCCAGGGATCATAAAGGCCATTTATCACAATTCTTTCAAACTTAATCGATTGTCCCTAACCCCACTGATTGCTCTGAAAGTACAGGGTAGAAGAGCATTTGTCCTTGGCTCACTTGGGCTGTCAGTTAAGTTTCAATCTTTTGAGTCCAGGCCAGACATGGACTAGGGCAATATCAATAGGAGACTAATGGTAGCCCAAAATGAAGGTTTTCATTTCCTATGCACCAAGCATCATTGTAATCAGATAGCTTCACTAAACTGCTTCTGCAAGCCTTTCCTCTTTATTGTCCAGCTTTCTGGGAACTTTATTTTATCACAGAATACTCCAGAAACAAAGTGGGTTGGTTTACTGGTTACTGCCATTGCTGAAAACTCAGGGAACATTTGCGAAGAGACCAAAACAGATGAGGTTTCATCTTGCAGAACAAAAGTAGCCACAAGGGAGGTCCTACCAGGGAGTGTCCTTGGGGATAGGAAGACAGAACTGGGAAAGATTCTGAAAGACAAAAGGCTAGGGTGTCACTTAGTGGGAGAATGCTTACTTAGCATGCAGAAATCAATAGGCCTCTGGGTTTAATCTCTAGCAGCAGAGGAGGTCAGGTGATCAGTGAAAGGCAGGAGAGGAAGGAGGACAGAAAGACTAGATACTAGGGGATCTATTCAAAACACTTAGTAGAGGAATGAGTAGAGCACTGGAACTTACCTCTGAAGATGAACTGTGACAGGCCAGAATATTGTCTAGGAATCTCCTCAGCCACAAGTCAGTACATGTGGCTCATAGGATATTTAAGAAATTTTCTTTATGACCAGGGCCAGTTTCTTTAGGTTTGAGAAACAACCCAAAAGTCTTTACTCTGGTGTCTAAGAATACTCAAGACCCCTGTTTAAACTCAAGCCTGCTGGAAAAACTTGCAGCCAGCTGAGTCAGGAGTGGACAAAGAACTGTGATTTTCAGTGAGGACACAGAAGAAACATGGGAGAGCCCTGGGAGGACCCTGTGGATGATATAGATGAGTAGACAGATGGAGCAGGTAAATCAATAATTGAAAGATGATAGGTATATGCATCGGTTGAATATAGTCCAGCCTATCTGGAGAGACAAAACATTTATGGACTAATTGATAGGACTAATTTTTGCTGAAATGCCACAATCCAGGGCATGAATGAGTAACCTATAAACCCTAGGCCTTGGAATATCCCATAACATGGGTGCAGACACAGTGGTTGCTGGTGAGGAAACACATTAAAGAGCTCATAAGACCCAAGGCCATTTGAGTCCTGAGATGTAACACTTTAACATAGCATGGTCTAAAGCCTGGCTTTAAAGCCAGGATCTAGTTCTAAGCAGCCAGCATTCCTACCCAAGCCCTCATCAGCTTCACTCCTGAGTTTTTCTCCTAGAGCCTGTCTGGGATAAGGAGAGAAAGGAATGAGAGCCAGGCATAGCTCTCATGCATTTTGATGTGTCTGTTATGACACTAACAATAATAGATTCTGCTTACATTTCTCCAGGATAGAGACTAGAACTGAGCATGGTGTAGTGGCCAGGCAGTCTTAGGGAGCATTGGAGGATGTCAGGAGGGTCATGGGGATAGAGTATGGATGTCAAGGACCATAAGCCCTTCAAATGATGGGCTACAAAAAAAACCTATGGGCTTTAAAATAACAGGAAATCGTAAGCATGCCAGGAGGTCATTGTAGGGATCCACATGAGCAGAGGCAGCTGGAGAGGAGATGAGAAAGTTACAGTCCTTCAGACAGAAAGAGAGAGGGCCCGAACATCAAGACAGTAAAGGGGGAAAGAAATAACGAGAGGCTTAAAGGAAGCAAAGCCAATTAATGATCTAGGAAACATGACAAAGAGTTGACAAAGCAAACAGGCACTAGAGAGGGGGGCTAGGGATGTAGGTGGTGACCTCCTGAACTTCTGTCCCAGGAATTCCAACAGGATACCCCCACTCAACTCCACAAACATAGGTGGAGGGCCTAGGTGTTCCTAGAACAGCACAGAAATGTAGACAGAGGGAAAATAGAAAACTTAACAAAGCTAGCCAGAGTCCCTAGACACAGCCAATTAACTCTGAGAAGACCTATTGGTCTTCTCAGAGATGGAATTTGACAAGTTGATGACATATGAGCCATAAATGAATTCACCCACATCAGAATAAAGCCGCAAAGCTTATTAGAACACTGCAGCAGAGCTGAAATGGGTAAAACAGCCAAGAGAAACTTTACACAGAGCCATTTAAAGGTTGCTTTTATGTGCAAGGTTTGCACATGGACTGTCAGGCAGTGTTTCAGTGACACAGTGTCCTGGAATAATTGTAGTCAGAATTTATCGTGGTTAGCAACAGCCTGGTCCCGAGGCAATGATGGTCTCGCCCTGAGTCAGATATGGCACAGCACAACCGCCTGGCCTACACTGGCACCCACATTCTGCAGCTACAACTTATAACAGGAGTTCTTTCTGATGAGATAATGGTCCTGTTTGTAGGCAGAAGTGACCTAGCACAGCCATTCATTGTGGAATGCCATCTACAACTCATATTACAGCAGTAATAATTTCCCTCTGACCTTAATACAGAGGCTGCTACAGAAACATCCAATGGCTTTGAAGCTGATAACACTTGGAATGATTTCTGAACCATGGTGGGGAGGGGCTAGCCTACTGTAAGAGTCATGCCTATGTCTCAAGACTTCTGACGCCCTCGGCTTCTCCAATGTCATTTTTCCACCTCTCCTCTCTTGATCTCTCTATCCCATATGCTGTTCTTTTGTGGAGTTTCCATTTCAACTTCTGGTGCCTCCACATCTGTCCCCATCTTCACCAATATTCTAGTCCTGGCTCTAGTTAGGCACAGGGTTTCTGGTACAGATGGTCTCTCCCACCTTGGGCGGAGCTTGCCACTCTTCCCTGTCATATTTCTCAACCCATCACTATGTTGGAAACGTCAGTCATCCTGCCTGTGTGAACACTTAGTTCCCTAGTGCAACTCAGTCATCACCATGGATTCCCCTCACCATCCTCCACTTTCATCCTTTTGCTGTGACCTGTCCTTATTCCAGGCCAAGAGCTCTGCCTAGGTGATGCTCCCACTTACCAATGATACCAAGAGATGTGTACAGCAAGCAAGTGGGGTGACATGAGTTCTACTGCTGGTTCTCAGGGAATAATGAATTTAAGACCTGTACTTATGGAAGGTTTTATGTTAGGCTTACGATTTGGTTCCTGAATTTCTAATTTAGGGTCCATTGTACTTATCAGGTTGATATATACATTTATACACCTACATGAACATACATACATACATACATACATACATACAAAGGGTGGGTGTGTGGATGCATACATACATTTATACATACATACATAGATACATACATACAAAGAGTGGGTGTGTGAATAGATAGATATATACATACATAGATACATAGATTCGCACATAAATACATAGATAGATGACAGATAATAGTCTCAACCTATAGGGAGAATAAAACACAATGCCTGGCACCCCCTCATTCTCCTGGAGACATCCCTAATTACTAGCCCTAAGGCAGCTGTGTCATCTTCATTCTGACTACAGTTTCACTCTCTCCCCATTTGATGTGTGTGTTCTTGTTCATTGTCTTCTCTTTTCTCACAAGAATGTCACCCACAGAAAGACCTTTCTTTTCTATCCTGTGTACTGTTGATTCCTCATGTCCCAAACATTCTCCAGCAGACAGTACCTACTCAATTAATATTTGTTAGGTGAATAGATAAGCAGGATAGCATGGTTTTGCTTTAATTTACTAGTAGTCTTCTTTTGTAGAGCATTTTCAAATTTGGAGAAAAACTGGTACACAGCTCCCTCATTTCTCTCCCTTCCTCATACATAGTCCCCATCCAATAAATCATATTACATTAAATGATAGGTGATCTAGGTAGTTTTATGTCAACTTGACACAGCTAGAATCACTGCAGCGGATGAAGATTCAATTGAGACTCTGCCTCCATAAGATCAAATTGTAGGCAAGTCCACAGGGCATGTGGAAGGGCCCAGTCTATGGTGATGGTGGTCCTGGGTTCTGTAAAAAATCAGGGTGAGTAAGCCAATAGACAGCACTTCTCCCTGGCCTCCACATCAGCTCCTGCCTCCAGGATCCTGCTCTGTTTGAGTTCCTATTCTGACTTTCTTCAATGATGAACAAGGCTGTGGAAGTGTACGTTAAATAAACCCTTTCTTCTCCAGCTTGCTTTTTGGTCAGTGTTTTATCACAGCTACAGTACTAACTAAGACAACATGTTAGTGTAGCATAGACAGTGCCAAAACACTGCTCTAAACTAAATCTAAGACTATGTCGGGATCCACTGTTTTGAAGAACAGTTGAAAATATAGCTCCATGGGCTTAAGGAAGTATATAATGTCATCTACCCAATGTGACAGTACCATGTGCAGTCCTCTCTCTGCCTCTTCTCTACCTGGGTCTCATTCTCTTCTCCCCTATTCCTTCCCTCAAAACTCTTGGGCAATTGATGATCCTTTTGGTTCCCTTATGTTTGCCTTTCCCTCCTGAGTTTGAGTTGTAGGGTTTAACGTGGCTTGGGATGCATTTTCCCTAGCTCTTTAAACTCTGCCCTACATCTAACCTTGCCTAGGTAGCTTCCTGACTGATTCTGACAAACCATTGCCTTAATCATCTCTGCTCATGCAAACCTCTAAAGACTCCTTGTAATAAATTCAAGGCTTTGTATTACTAAGACTTTCCTTAGTAATCAATTTTCCATCCCAAATGGCACCTTTACTTTTCTCTGGGCACATCATTATTTTGCTCATTTTTCTTCCATAATCTTTCATCCTCCTGGATGGCCTTCCCCTCTCCCCACCACACAGACAGGAACATGCACTACAGAGTGCTTTCTGAAGCACCTTCTTCTGGGAACTAGGTATTCAGGCTTATGTCTGCCTCCTTTTGTTTTCTCAGTAGCCCCATTTTATTGGAGTGTATTCTGAGACGATCAGAGGAAAAAGAAATTGCAGCCATATAACAAATTCATCTTATTTCATAAATTTATAGTGTATATATGCATATGAGCATATATGTATGTGTATGCATTTTTGTGTAGAAGGAAAAAGAAGGAAAGAGAGAGAGGGAAAGAGACAAATATGTGTGTATGTATGTATGTATATATATGTCAATATATATATATATATTCTTTTTAGATTAGACAAATACATGCTCTCCTACTGATCTACCCTCATAGCCCATTGGTATATATTTAGAACTTGGCAAAGGTAGATTATGGGATGTACTGTTTCCCCTGCTTTCATGATAGCAAAATCCTTTTCTCAAGGAACTTCTGGTTTTCCACAAAACCTATCTTGGAATGTGCTATTGTTCTGCCATGTTGTCTTCACCTATCACACTGGACTATTCTTATCCATTCCTCTCTGGGCTCTGTAACTCTGTGACACTGTGGTCTGCAGTATTCGCCAAAACCAATACTTCTGTAGCAATTCCCTCTGATTTGTATCTTATTGCCAACACCTTCCCAAAAGTCCCTAGAGGAACCATATCCAGCAGTGGGTCCTATACACACAAGCAGTCATTTCATAAATGACATCACAATAGATGTCAGGGCTCCTATGACTGCAAATCACTGGCATTTTAGAGGCATCCCGTAGCCTCCTGGACCTGCCCCTCACCACTCTCACATTGCTCAGTAGTTCCTCCTTAATGCCAAATTTTTTATATTTTAGGACAGAAATATATTCTTCCATTTGAAATTCGTTTTCTGCTTTCATTTGACAAGATTTGCCCTTAGTTGCCTCTATAACTGTTGTCAGTTCCTGACATCCCCAGCCCCACTTTACCTGGGAAGTCTGAGCGGCAGGGCATGGATTGAAAATGTGGGCATTGGGTTCCCATTAGGGTGTGCCAAAGCCTGAACAGAAGCTTATTTGTCTATGTGGTATAAGAGAAGCTATCTTTTATTCATTTCCTGGGACTTTGAACATTCCAGAATGCTCAGGAAGAAACCCCGATGGCATCTTAAAGGGGTTTCTCCCTACAGCATTGTGGAAAGCTTGTTTGATACCATGACTTGTGTTGTGACCTGTTGCCTTCAAAAGCATAATTGTTCTTGAAATTACAATGCTAGTTTCAGGAGACTGATGTGTCTACAATAACAAGGCTGGAAAATGACTGTGGGCACCACTCTAAGGTGTTGTCATCATTTAATCTTTATATGTTTCCTTGCAG
Seq C2 exon
TCCTGTGGCAACATCTACAAAGGCCTGGCTCAGACTGGTGCCTGGGGCTGTTTTGATGAATTTAACCGAATCTCTGTGGAGGTCTTGTCAGTGGTGGCTGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004171:ENSRNOT00000005583:27
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.151 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=FE(22.5=100)
A:
NA
C2:
PF127742=AAA_6=FE(14.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]