GgaINT0127358 @ galGal3
Intron Retention
Gene
ENSGALG00000001111 | DNAH9
Description
NA
Coordinates
chr18:1051896-1052960:+
Coord C1 exon
chr18:1051896-1052061
Coord A exon
chr18:1052062-1052855
Coord C2 exon
chr18:1052856-1052960
Length
794 bp
Sequences
Splice sites
5' ss Seq
AAGGTACTG
5' ss Score
8.56
3' ss Seq
TTTATTTTTGTATCTTTCAGTCT
3' ss Score
9.68
Exon sequences
Seq C1 exon
CTGTGGAAGATGTTACATCACCCTGACCCAGTCTCTGCATCTGACCATGAGCGGAGCACCTGCGGGCCCTGCAGGCACCGGCAAGACGGAGACTACGAAAGACTTGGGGCGAGCCCTGGGCATCATGGTGTATGTGTTTAACTGCTCTGAGCAGATGGACTACAAG
Seq A exon
GTACTGCAGCACCTGCACCTCAGCCTGGGGATGCCTGGTGAAACCTCACGTAATCCCTCTGAGATCACTGCCATCCACCACCTCGCTCTGCTCCTTTCTGTTGCACTCCATGTCCTCCTCCTCCCTTTTCTAAGACTTGCACGTGGTTCTTTGAAAGGCAGAGAACCAAACCCCTCTCTCTGCCTCATTACACCTTTCCCTTTCCTTCTGGCATTAGTTTTGCATGTGAAATGCTTGAAAAATCTGTGTTAATTCTTCAGCTCTTGTCGTTTCTCCCCGCCGTGCTCATGGGCTGATGTGCCCTGCCAGGGATGGCTCCTGCCCTGCTTTTTTCAGGGTTCTCTGCCAAATAAAGGCAAAGCCTGCTGAACCTTCCATCACTGCAGAAGGTTGAATCATCAGGTCGAGCTTTGCTCCCTGCCACTTTGGCACGGTACAATGATTTGGTAGCCTTAGATCATATTTTATTCAGCTTATGGGCTCTCCCAGGAAGCAGAGCCATAAGTAATTCAGCACAGGTGACCTTTAAATCAAACCAGTGCACGGATGGATCAAGAAAGTGCAATTAGCAAATCAAGTGGCAAACAGCGCGGAGCTATAAATATTATAATTGAGTTGTGCCTGCTGCTTCCATGCACTTTTCTAAATACCCACAATAGGCTGTAAACTGCTAAAAATAAACAGACTGGGAAAGAAAATAAGAATCTCTTTTTTTTTTTTCTTTTTGGGGTTGATTCCGTTCCTAACGTCACTGCTGTAATTTTGTCATCCTGCTTTATTTTTGTATCTTTCAG
Seq C2 exon
TCTTGTGGGAATATTTACAAAGGCCTTTCCCAGACGGGAGCCTGGGGCTGTTTTGATGAGTTTAACAGGATCTCAGTTGAGGTCCTTTCTGTGGTGGCTGTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001111:ENSGALT00000039398:28
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.143 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=FE(23.5=100)
A:
NA
C2:
PF127742=AAA_6=FE(14.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGGAAGATGTTACATCACCCT
R:
TGTACAGCCACCACAGAAAGG
Band lengths:
270-1064
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]